Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01956 ATGCCAAATCCCGCGAAGAAGCACGTCTTTCTCTTCTACTGCGCGGAATGCGAAGAACTTGCCCACAAAGTTGCTGCTCAATCCGATTCCATCACTCTTCAAACCATCAAATGGAGGACGTTTGATGATGGTTTTCCAAATATTTATATAAACAATGCTCAAGATCTACGCGGGAATCATGTAGCATTCCTTGCATCCTTCAGCCACCCAGGAGCCATCTTTGAACAGATATCAGTCATATACAATCTCCCCAGGCTTTTCTCTGCTTCATTCACCTTGGTATTGCCCTTCTTTCCTACTGGCTCCTTTGAGCGAATGGAAGAAGAAGGGGATGTAGCAACAGCATTTACCATGGCCAGGATCTTATCAAATATCCCTATTTCAAGAGGTGGCCCAACAAGCGTAGTTATCTATGATATTCATGCCTTGCAGGAAAGGTTTTACTTTGGGGATAATGTTTTGCCTTTGTTTGAAACTGGAATTCCACTCCTGAAGCAACGTCTGCGCCAACTTCCTGATGCTGACAACGTAGTTATAGCATTTCCAGATGATGGAGCTTGGAAACGATTCCACAAGCAACTCGATGGCTATCCTGTGGTCATCTGCACAAAAGTTCGGGAAGAAGACAAAAGGATAGTGCGGATCAAGGAAGGAGTCCCTGCTGGTTGTCACGTTGTTATCGTTGATGATTTGAAAGTTTTAGCAGCTCACGGTGCGGCCAAGGTTAGCGCATATGTTACTCATGGTGTTTTCCCAAAGCAATCATGGAATCGATTCCTTCACAAGAACGGTCTGGAGATAGCGTTTTCCCACTTCTGGATCACAGATTCCTGCCCTCACACAGTCAAAGCCATAGCAGATAAAGCTCCTTTTGAAGTTCTGAGTCTAGCAGCTTCCATTGCTGATGCTTTGATCTCCGATTCCCCTGTTCTCGTCTTTATTACCTGCTTCTTCATCGCTCAGCAGTTGGGTTTAGGGCATTCATCGAGTAGGAATGCTAAAAGTTTCCATACTCGATCTGATTTTGGTTACTTTATGGTAGCCGGTGGTGTTGGTTGTTCTGGGTCGGTGATTGAGTTTCTGGTTCAGGTTTTGGGATTGCAGGTAGGGAAGTGTATGAGGGATTTGATTCGGGTAATTTTATTATGTTCCGTGGAGGATTCGGGAAGGAGCATAAGGAGGGATTGTGGGTTTGTGATCCGGAGCAGGGATTTTGTGTTCACTGTTCTCGACGAAGTTGGGTTTGAGAGTTTAGGGAAATGCAGACCAATCACCGATTCTGCAGAGTTGGACTTTTTCTCTGAATATGGCGACGCTAACAGATTCAAAATTCAGGAAGTTGTTGGGAAGGGGAGTTATGGAGTGGTTTGTTCAGCTGTCGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATAAATGATATTTTTGAACACCTATCGGATGCTGCTCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCTGATATTGTTGAAATCAAACACATTATGCTACCGCCTTCTCGTAGGGGGTTCAAAGATATCTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCTAATGATGATTTAACAACAAAGCACTATCAATTTTTCCTTTATCAGCTACTCCGTGCACTAAAATATATTCACGCAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATATGTGATTTTGGATTGGCTAGAGTTGCTTTCAGTGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACCAGATGGTATAGAGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTAACTGGAAAACCAATTTTTCCCGGTAAAAATGTTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGAGAAGGCTAGAAGGTACTTAGCTAGTATGAGGAAGAAGCAGCCCATTCCGTTTTCACAGAAGTTCCCAAATGCGGATCCTCTAGCCCTGCAATTACTACAACGATTGCTTGCGTTTGATCCAAAGGATCGACCTACTGCGGAAGAGGCATTGGCAGATCCTTACTTTAAAGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCGAAGGTGGAGTTTGAATTTGAGAGGAGAAAGGTCACAAAGGACGACATTCGCGAGCTGATATTCCGGGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGAGCAAATTTTCTTTATCCAAGTGCACTCGATCAGTTCAAAAAACAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGCTTATCCTCTAGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTTCAGTCGAACACCATTCCTCCTAAAGCAACATCGAATATTGCTTCTTTTAAAGACCGATATGTGCCACCAGGGTCGTACAGCAACCGGCATTACAGAGATCCAGCTGCACAGAGGATTGCTGCAACTCAAGGTGAGCCTGGAAGAATATCAGGCCCGGTCATGCCATATGATAGTGGAAGTATCGCCAAGGATGCCTATGATCCAAGAAGGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAACATATTATTACCAGCAGTCTTGCGGCAAAAGTGAAGAATCATCAACAACAGGGGCTGAGAAAGACACTTCCTTGCAATGCAAACAAGCCCCTCAATGTGGAATGGCAGCCAAATTAACATCCGACACAGCAGCTACTGGTGCTTTCTCAAATCCTTTTTTTATGGCACGTATAGGATTGCACAAGGCAGGAAACAATGATCGTGCTGCACGTGTGCAGGTAAACGCTCAATATGATACTGGAGCCGTTCCAGCTGCAACTGCCACCACCCATAGAAACACTGGCATGGTCGAGTATGGTATGACAAGAATGTATTAG 3069 43.7 MPNPAKKHVFLFYCAECEELAHKVAAQSDSITLQTIKWRTFDDGFPNIYINNAQDLRGNHVAFLASFSHPGAIFEQISVIYNLPRLFSASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSVVIYDIHALQERFYFGDNVLPLFETGIPLLKQRLRQLPDADNVVIAFPDDGAWKRFHKQLDGYPVVICTKVREEDKRIVRIKEGVPAGCHVVIVDDLKVLAAHGAAKVSAYVTHGVFPKQSWNRFLHKNGLEIAFSHFWITDSCPHTVKAIADKAPFEVLSLAASIADALISDSPVLVFITCFFIAQQLGLGHSSSRNAKSFHTRSDFGYFMVAGGVGCSGSVIEFLVQVLGLQVGKCMRDLIRVILLCSVEDSGRSIRRDCGFVIRSRDFVFTVLDEVGFESLGKCRPITDSAELDFFSEYGDANRFKIQEVVGKGSYGVVCSAVDTLTNEKVAIKKINDIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTTKHYQFFLYQLLRALKYIHAANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPIFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLASMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFREILEYHPQLLKDYLNGTERANFLYPSALDQFKKQFAHLEDNGGKSGPAYPLERKHASLPRSSVQSNTIPPKATSNIASFKDRYVPPGSYSNRHYRDPAAQRIAATQGEPGRISGPVMPYDSGSIAKDAYDPRRLIRSALPSHAIHPTYYYQQSCGKSEESSTTGAEKDTSLQCKQAPQCGMAAKLTSDTAATGAFSNPFFMARIGLHKAGNNDRAARVQVNAQYDTGAVPAATATTHRNTGMVEYGMTRMY 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12834957 12842909 - CmaCh11G019560.1 Cma11g01956 304465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01956 1022 ProSiteProfiles Protein kinase domain profile. 442 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01956 1022 Gene3D Transferase(Phosphotransferase) domain 1 528 756 - -
Cma11g01956 1022 MobiDBLite consensus disorder prediction 813 853 - -
Cma11g01956 1022 ProSitePatterns MAP kinase signature. 477 580 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma11g01956 1022 SMART Pribosyltran_N_2 9 126 - -
Cma11g01956 1022 Gene3D Phosphorylase Kinase; domain 1 457 779 - -
Cma11g01956 1022 ProSitePatterns Protein kinases ATP-binding region signature. 448 472 IPR017441 GO:0005524
Cma11g01956 1022 CDD PRTases_typeI 161 252 IPR000836 -
Cma11g01956 1022 SUPERFAMILY Protein kinase-like (PK-like) 439 737 IPR011009 -
Cma11g01956 1022 CDD STKc_TDY_MAPK 441 778 - -
Cma11g01956 1022 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 426 901 - -
Cma11g01956 1022 MobiDBLite consensus disorder prediction 829 845 - -
Cma11g01956 1022 Pfam Protein kinase domain 443 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01956 1022 SUPERFAMILY PRTase-like 7 169 IPR029057 -
Cma11g01956 1022 Gene3D - 7 165 IPR029057 -
Cma11g01956 1022 Gene3D - 166 288 IPR029057 -
Cma11g01956 1022 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 426 901 - -
Cma11g01956 1022 SMART serkin_6 442 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01956 1022 SUPERFAMILY PRTase-like 176 304 IPR029057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01956 Cma-Chr11:12834957 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma11g00654 Cma-Chr11:3178213 Cma11g01956 Cma-Chr11:12834957 1.04E-09 transposed
Cma19g01073 Cma-Chr19:8972462 Cma11g01956 Cma-Chr11:12834957 0 transposed
Cma19g01075 Cma-Chr19:8983973 Cma11g01956 Cma-Chr11:12834957 0 transposed
Cma11g01956 Cma-Chr11:12834957 Cma19g01072 Cma-Chr19:8971067 1.91E-162 wgd
Cma11g01956 Cma-Chr11:12834957 Cma02g00039 Cma-Chr2:202860 0 wgd
Cma11g01956 Cma-Chr11:12834957 Cma20g00258 Cma-Chr20:1252413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68934 PF00069 Pkinase 6.30E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01956 - - csv:101214068 1079.7