Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01961 | ATGGCGAATGATGAAGGGGAAAATAAGGTGTACCAGCAGTATGATCCATTTGTTTACAACCAGCTGGATATGAACCGTACCATCCTCCAGCAACAGCCGTCGTTGGATCCTGCTTTCATGAGCTTCACCAACTTCTTCGACACGTCGTTGGAGTACAACAGCGTGTGGAGGGCGTTGGACGTGTCCTGCTCTTCATCGGAACTCATTTCTCCGGTGGACGACATGTCCAAAAAGAAGGCTTCAAATTCTTCAGTGTCGTCTTCATCTGATGAGGCTGCACCTGCAGCTGAAGACGATTCCGTGAAGAGCAAGAAAGAAGAGAAGCGTAAGAAACAGAACGCAGCCCAAAAGAAAGAGAAGCGAGAGAGGGAGCCCCGGTTTGCTTTCTTGACTAAGACTGAGATTGATCAGCTTGAAGATGGATATAGGTGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCGTAGTGAAGAAACGAGTAGAAAGATCATACCAAGATCCATCCCTGGTCATAACTACGTATGAAGGCCAACACATCCACCATTGCCCGGCTACACTCCGAGGCCATTTGTCTCCGTTTCACGCATCGGCACCCTCCTCGGGGCCTGCCCTTCCCCAAGAACTCTTCTCGCATTTGCTATCGAAGAACTGCCAGACCGATCCCGCGTCAATGATGTACCAAAATCTAAATCTCCAGCAACATCTTCAAATGCCGGATCATTATAGCCTGTTGCAGGATTTGTTCACTCAAAAATAG | 801 | 47.82 | MANDEGENKVYQQYDPFVYNQLDMNRTILQQQPSLDPAFMSFTNFFDTSLEYNSVWRALDVSCSSSELISPVDDMSKKKASNSSVSSSSDEAAPAAEDDSVKSKKEEKRKKQNAAQKKEKREREPRFAFLTKTEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSLVITTYEGQHIHHCPATLRGHLSPFHASAPSSGPALPQELFSHLLSKNCQTDPASMMYQNLNLQQHLQMPDHYSLLQDLFTQK | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12851050 | 12852281 | + | CmaCh11G019610.1 | Cma11g01961 | 304470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01961 | 266 | Gene3D | WRKY domain | 122 | 199 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01961 | 266 | MobiDBLite | consensus disorder prediction | 72 | 93 | - | - | |
Cma11g01961 | 266 | MobiDBLite | consensus disorder prediction | 72 | 125 | - | - | |
Cma11g01961 | 266 | MobiDBLite | consensus disorder prediction | 95 | 125 | - | - | |
Cma11g01961 | 266 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 11 | 264 | IPR044810 | GO:0003700 | |
Cma11g01961 | 266 | SUPERFAMILY | WRKY DNA-binding domain | 131 | 198 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01961 | 266 | ProSiteProfiles | WRKY domain profile. | 133 | 198 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01961 | 266 | Coils | Coil | 101 | 124 | - | - | |
Cma11g01961 | 266 | PANTHER | WRKY TRANSCRIPTION FACTOR 71-RELATED | 11 | 264 | - | - | |
Cma11g01961 | 266 | Pfam | WRKY DNA -binding domain | 139 | 195 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01961 | 266 | SMART | WRKY_cls | 138 | 197 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00420 | Cma-Chr3:4495889 | Cma11g01961 | Cma-Chr11:12851050 | 6.03E-22 | dispersed | |
Cma11g01961 | Cma-Chr11:12851050 | Cma17g00379 | Cma-Chr17:2109793 | 6.43E-50 | dispersed | |
Cma11g01961 | Cma-Chr11:12851050 | Cma19g01082 | Cma-Chr19:9010129 | 1.37E-136 | wgd | |
Cma11g01961 | Cma-Chr11:12851050 | Cma20g00259 | Cma-Chr20:1265843 | 2.64E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35940 | PF03106 | WRKY | 1.30E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01961 | - | - | cmos:111437082 | 474.167 |