Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01961 ATGGCGAATGATGAAGGGGAAAATAAGGTGTACCAGCAGTATGATCCATTTGTTTACAACCAGCTGGATATGAACCGTACCATCCTCCAGCAACAGCCGTCGTTGGATCCTGCTTTCATGAGCTTCACCAACTTCTTCGACACGTCGTTGGAGTACAACAGCGTGTGGAGGGCGTTGGACGTGTCCTGCTCTTCATCGGAACTCATTTCTCCGGTGGACGACATGTCCAAAAAGAAGGCTTCAAATTCTTCAGTGTCGTCTTCATCTGATGAGGCTGCACCTGCAGCTGAAGACGATTCCGTGAAGAGCAAGAAAGAAGAGAAGCGTAAGAAACAGAACGCAGCCCAAAAGAAAGAGAAGCGAGAGAGGGAGCCCCGGTTTGCTTTCTTGACTAAGACTGAGATTGATCAGCTTGAAGATGGATATAGGTGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCGTAGTGAAGAAACGAGTAGAAAGATCATACCAAGATCCATCCCTGGTCATAACTACGTATGAAGGCCAACACATCCACCATTGCCCGGCTACACTCCGAGGCCATTTGTCTCCGTTTCACGCATCGGCACCCTCCTCGGGGCCTGCCCTTCCCCAAGAACTCTTCTCGCATTTGCTATCGAAGAACTGCCAGACCGATCCCGCGTCAATGATGTACCAAAATCTAAATCTCCAGCAACATCTTCAAATGCCGGATCATTATAGCCTGTTGCAGGATTTGTTCACTCAAAAATAG 801 47.82 MANDEGENKVYQQYDPFVYNQLDMNRTILQQQPSLDPAFMSFTNFFDTSLEYNSVWRALDVSCSSSELISPVDDMSKKKASNSSVSSSSDEAAPAAEDDSVKSKKEEKRKKQNAAQKKEKREREPRFAFLTKTEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSLVITTYEGQHIHHCPATLRGHLSPFHASAPSSGPALPQELFSHLLSKNCQTDPASMMYQNLNLQQHLQMPDHYSLLQDLFTQK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12851050 12852281 + CmaCh11G019610.1 Cma11g01961 304470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01961 266 Gene3D WRKY domain 122 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01961 266 MobiDBLite consensus disorder prediction 72 93 - -
Cma11g01961 266 MobiDBLite consensus disorder prediction 72 125 - -
Cma11g01961 266 MobiDBLite consensus disorder prediction 95 125 - -
Cma11g01961 266 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 264 IPR044810 GO:0003700
Cma11g01961 266 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01961 266 ProSiteProfiles WRKY domain profile. 133 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01961 266 Coils Coil 101 124 - -
Cma11g01961 266 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 11 264 - -
Cma11g01961 266 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01961 266 SMART WRKY_cls 138 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00420 Cma-Chr3:4495889 Cma11g01961 Cma-Chr11:12851050 6.03E-22 dispersed
Cma11g01961 Cma-Chr11:12851050 Cma17g00379 Cma-Chr17:2109793 6.43E-50 dispersed
Cma11g01961 Cma-Chr11:12851050 Cma19g01082 Cma-Chr19:9010129 1.37E-136 wgd
Cma11g01961 Cma-Chr11:12851050 Cma20g00259 Cma-Chr20:1265843 2.64E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35940 PF03106 WRKY 1.30E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01961 - - cmos:111437082 474.167