Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01962 | ATGTCATCTGGAAGTAGTCTGAATACAGAATTGTCAAAGAAAACATCCTTCCTTGGTTTGTCCTTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATTTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCTGAAAACTTCTCTGTTTCTCAAATACCAAATGTCTCAAAGGATATCAAGGTGGACAGAATAGCTACTCAATCTGCTCACCACAATCATCTTGAGAGTCTATATCTTTCCATTAATGATAAATCTAGTGACAAGAACTCGGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATCATAATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGGGTTCCATGTCATATGGAGCGTATGGAGGACTTGTAACTGCCTCTCCTCTTGTTGGCTTGCCCGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTTGAATATGCAACAAATCGTTTTTCTGCTGACAATGTGCTTGGTGAAGGGGGTTATGGGGTAGTCTATAAAGGCAGACTGATAAATGGAACTGAAGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTAAGGCACAAGAATCTTGTACGGCTTCTGGGCTACTGCATAGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGCACCCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCTTATTTACATGAAGCAATTGAGCCGAAGGTTGTCCATAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGGTTGGCTAAACTGTTGGATGCAGGGGAGAGTCATATCACGACTAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAGTATGCAAACACGGGCTTGTTAAACGAGAAGAGTGACATTTACAGCTTCGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACTATGGCCGTCCTGCCAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTCATGGACCCAAGTCTTGAAACGAAACCCGCTACTCGGGCGTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCGTCACGTGAGGATCGGAGGAGCCAAAAGAGCAGCACAGCTAATTCGGAGATTGAATCCACAAAAGAGAGCTCCGGTCAAGGCGAGGCGGGAAGTAATGCATGA | 1509 | 43.54 | MSSGSSLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNHLESLYLSINDKSSDKNSEKMIGHLGMSKSSDHDNISQCSSNYHNERVFSSHSGEEGSSGTVRKQGSMSYGAYGGLVTASPLVGLPEISHLGWGHWFTLRDLEYATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVMDPSLETKPATRALKRALLIALRCVDPEADKRPKMSQVVRMLEADDYPSREDRRSQKSSTANSEIESTKESSGQGEAGSNA | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12853356 | 12856612 | - | CmaCh11G019620.1 | Cma11g01962 | 304471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01962 | 502 | PANTHER | OS10G0497600 PROTEIN | 2 | 498 | - | - | |
Cma11g01962 | 502 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - | |
Cma11g01962 | 502 | SMART | serkin_6 | 192 | 463 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01962 | 502 | CDD | STKc_IRAK | 198 | 464 | - | - | |
Cma11g01962 | 502 | SUPERFAMILY | Protein kinase-like (PK-like) | 176 | 469 | IPR011009 | - | |
Cma11g01962 | 502 | PANTHER | OS01G0323000 PROTEIN | 2 | 498 | - | - | |
Cma11g01962 | 502 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 482 | - | - | |
Cma11g01962 | 502 | Gene3D | Phosphorylase Kinase; domain 1 | 174 | 267 | - | - | |
Cma11g01962 | 502 | MobiDBLite | consensus disorder prediction | 455 | 502 | - | - | |
Cma11g01962 | 502 | ProSiteProfiles | Protein kinase domain profile. | 192 | 450 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01962 | 502 | Pfam | Protein kinase domain | 194 | 461 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01962 | 502 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 314 | 326 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01962 | 502 | Coils | Coil | 212 | 232 | - | - | |
Cma11g01962 | 502 | MobiDBLite | consensus disorder prediction | 455 | 480 | - | - | |
Cma11g01962 | 502 | ProSitePatterns | Protein kinases ATP-binding region signature. | 198 | 221 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01058 | Cma-Chr5:8420226 | Cma11g01962 | Cma-Chr11:12853356 | 0 | dispersed | |
Cma11g01962 | Cma-Chr11:12853356 | Cma14g02059 | Cma-Chr14:14306599 | 1.28E-168 | dispersed | |
Cma17g00398 | Cma-Chr17:2259795 | Cma11g01962 | Cma-Chr11:12853356 | 1.53E-172 | dispersed | |
Cma19g00663 | Cma-Chr19:6968966 | Cma11g01962 | Cma-Chr11:12853356 | 5.38E-155 | dispersed | |
Cma11g01962 | Cma-Chr11:12853356 | Cma19g01083 | Cma-Chr19:9013783 | 0 | wgd | |
Cma11g01962 | Cma-Chr11:12853356 | Cma02g00038 | Cma-Chr2:195273 | 0 | wgd | |
Cma11g01962 | Cma-Chr11:12853356 | Cma20g00260 | Cma-Chr20:1270014 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68935 | PF00069 | Pkinase | 6.50E-48 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01962 | - | - | csv:101212378 | 940.258 |