Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01962 ATGTCATCTGGAAGTAGTCTGAATACAGAATTGTCAAAGAAAACATCCTTCCTTGGTTTGTCCTTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATTTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCTGAAAACTTCTCTGTTTCTCAAATACCAAATGTCTCAAAGGATATCAAGGTGGACAGAATAGCTACTCAATCTGCTCACCACAATCATCTTGAGAGTCTATATCTTTCCATTAATGATAAATCTAGTGACAAGAACTCGGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATCATAATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGGGTTCCATGTCATATGGAGCGTATGGAGGACTTGTAACTGCCTCTCCTCTTGTTGGCTTGCCCGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTTGAATATGCAACAAATCGTTTTTCTGCTGACAATGTGCTTGGTGAAGGGGGTTATGGGGTAGTCTATAAAGGCAGACTGATAAATGGAACTGAAGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTAAGGCACAAGAATCTTGTACGGCTTCTGGGCTACTGCATAGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGCACCCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCTTATTTACATGAAGCAATTGAGCCGAAGGTTGTCCATAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGGTTGGCTAAACTGTTGGATGCAGGGGAGAGTCATATCACGACTAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAGTATGCAAACACGGGCTTGTTAAACGAGAAGAGTGACATTTACAGCTTCGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACTATGGCCGTCCTGCCAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTCATGGACCCAAGTCTTGAAACGAAACCCGCTACTCGGGCGTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCGTCACGTGAGGATCGGAGGAGCCAAAAGAGCAGCACAGCTAATTCGGAGATTGAATCCACAAAAGAGAGCTCCGGTCAAGGCGAGGCGGGAAGTAATGCATGA 1509 43.54 MSSGSSLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNHLESLYLSINDKSSDKNSEKMIGHLGMSKSSDHDNISQCSSNYHNERVFSSHSGEEGSSGTVRKQGSMSYGAYGGLVTASPLVGLPEISHLGWGHWFTLRDLEYATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVMDPSLETKPATRALKRALLIALRCVDPEADKRPKMSQVVRMLEADDYPSREDRRSQKSSTANSEIESTKESSGQGEAGSNA 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12853356 12856612 - CmaCh11G019620.1 Cma11g01962 304471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01962 502 PANTHER OS10G0497600 PROTEIN 2 498 - -
Cma11g01962 502 MobiDBLite consensus disorder prediction 481 502 - -
Cma11g01962 502 SMART serkin_6 192 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01962 502 CDD STKc_IRAK 198 464 - -
Cma11g01962 502 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
Cma11g01962 502 PANTHER OS01G0323000 PROTEIN 2 498 - -
Cma11g01962 502 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Cma11g01962 502 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Cma11g01962 502 MobiDBLite consensus disorder prediction 455 502 - -
Cma11g01962 502 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01962 502 Pfam Protein kinase domain 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01962 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Cma11g01962 502 Coils Coil 212 232 - -
Cma11g01962 502 MobiDBLite consensus disorder prediction 455 480 - -
Cma11g01962 502 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01058 Cma-Chr5:8420226 Cma11g01962 Cma-Chr11:12853356 0 dispersed
Cma11g01962 Cma-Chr11:12853356 Cma14g02059 Cma-Chr14:14306599 1.28E-168 dispersed
Cma17g00398 Cma-Chr17:2259795 Cma11g01962 Cma-Chr11:12853356 1.53E-172 dispersed
Cma19g00663 Cma-Chr19:6968966 Cma11g01962 Cma-Chr11:12853356 5.38E-155 dispersed
Cma11g01962 Cma-Chr11:12853356 Cma19g01083 Cma-Chr19:9013783 0 wgd
Cma11g01962 Cma-Chr11:12853356 Cma02g00038 Cma-Chr2:195273 0 wgd
Cma11g01962 Cma-Chr11:12853356 Cma20g00260 Cma-Chr20:1270014 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68935 PF00069 Pkinase 6.50E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01962 - - csv:101212378 940.258