Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01981 ATGTTAAACCTTTTCTCTGTTTTCCTTTTCCTCACCTTCATCCTCCCTGCTGATGTAGTCCACGCCGGGCGTGGGCGGGAGTCTTGTACCTGTCATTCCGCCGCCGACCACAACGCAGAGGAGGCAATCAAATACAAGGTTGGCTCGATTGCTTCGGTGCTCGTGGCCGGCGCTGCGGGTGTGAGCCTTCCTTTGGTGGGCAAGAGGATTCCGTCTCTGAGGCCTGAAAATGACATCTTTTTCATGATCAAGGCTTTTGCTGCGGGTGTCATTTTAGGCACTGGGTTCATCCACATACTGCCTGATGCCTTCCAGGACTTGACCTCCCCCTGCATCGGACAGAACCCTTGGGGCAATTTCCCATTTGCGGGGTTCATTGCCATGGCCTCCTCCATCGGCACCTTGATGGTGGACACATTCGCAACCAGCTTCTACCAGAGACGCCACTTCAGTAAAATCAAGCATGTAATTGCAGTTGCAGACCAGGAAAGAGGCGAGGAGCATGCCGGTCACGTGCATGTCCACACCCACGCCACACATGGTCACGCTCACGGCTCTGCAGCACCCGCCGGAGAAACATCGAGTCTGACTGAGTTAATCCGGTACCGGATTGTTTCTCAGGTGTTGGAATTGGGGATTGTGGTTCATTCAGTAATAATTGGGATTTCTCTAGGTACCTCCCACAGCCCTGCCACCATTAAGCCACTGCTGGTGGCTCTGTCTTTCCACCAGTTTTTTGAGGGAATGGGACTCGGTGGCTGCATTTCCCAGGCACAGTTTAGGTGGCGATCAGCGGCAGCAATGGCGACATTTTTTTCACTGACAGCGCCTGTGGGCATTGCAGTGGGAATCGGAATTTCGGGAGTTTACAGAGACAGCAGCCGGACGACTCTGATCGTGGAAGGGAGCATGAACTCTGCATCGGCTGGGATATTGATATACATGGCGCTGGTGGATCTTCTTGCGGCGGATTTCATGAACCCAAGGATGCAGAATAATTTCGGGCTTCAATTAGGATCTAATATCTCTTTGCTTCTGGGGGCTGCTTGCATGTCTGTATTGGCCAAATGGGCTTGA 1077 52.74 MLNLFSVFLFLTFILPADVVHAGRGRESCTCHSAADHNAEEAIKYKVGSIASVLVAGAAGVSLPLVGKRIPSLRPENDIFFMIKAFAAGVILGTGFIHILPDAFQDLTSPCIGQNPWGNFPFAGFIAMASSIGTLMVDTFATSFYQRRHFSKIKHVIAVADQERGEEHAGHVHVHTHATHGHAHGSAAPAGETSSLTELIRYRIVSQVLELGIVVHSVIIGISLGTSHSPATIKPLLVALSFHQFFEGMGLGGCISQAQFRWRSAAAMATFFSLTAPVGIAVGIGISGVYRDSSRTTLIVEGSMNSASAGILIYMALVDLLAADFMNPRMQNNFGLQLGSNISLLLGAACMSVLAKWA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12966451 12968209 + CmaCh11G019810.1 Cma11g01981 304490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01981 358 TIGRFAM zip: ZIP zinc/iron transport family 30 358 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma11g01981 358 Pfam ZIP Zinc transporter 45 355 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma11g01981 358 PANTHER ZINC/IRON TRANSPORTER 26 358 - -
Cma11g01981 358 PANTHER METAL TRANSPORT PROTEIN 26 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01296 Cma-Chr1:9284934 Cma11g01981 Cma-Chr11:12966451 7.60E-123 dispersed
Cma05g00093 Cma-Chr5:397954 Cma11g01981 Cma-Chr11:12966451 3.10E-87 dispersed
Cma11g01981 Cma-Chr11:12966451 Cma18g00546 Cma-Chr18:3514491 1.47E-111 dispersed
Cma11g01981 Cma-Chr11:12966451 Cma19g01119 Cma-Chr19:9194576 1.47E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01981 K14709 - csv:101216720 498.819