Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00001 ATGGCGGCTCGGAGGATATCCTCGCTCATATCTCGTTCCCTTGCTTCTTCACCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAACAACTGGCAAATATAGCACCTCCGCTGCTGTTGAGGATCCAATTACTCCATCTGTGAAAGTAAATTATACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGAGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATATTGACCTTGCAGTTTCTGCTGCACGCAAGGCATTCGATGATGGGCCTTGGCCTAGAATGACTGCTTATGAAAGGTCAAAGATACTTTTGCGATTTGCCGATTTGGTTGAGAAGCATGCCGATGAAGTTGCAGCACTCGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAATTGGAAGTCCCAATGTTTGTACGCCTCTTCCGATATTATGCGGGGTGGGCCGATAAGATACACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTATCTATGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGCGGGCGTTCTCAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCAACCGAAACAGGGCAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTTGTTCATGAAAAAGTGTACGATGAGTTTCTAGAAAAATCAAGGAAACGAGCTGCAAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGACGGCGAACAATTCAAAAAGATTTTGAAATATATAAAATCTGGGATTGAAGGTGGAGCCACTCTCGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGACAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGGTTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCTGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACCCGTGCTCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTCGATATATTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGTATTTACAGCCTCAGCAATTATCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTGCTTGGCTCTAA 1608 47.01 MAARRISSLISRSLASSPALLSKGRRPSGGRTTGKYSTSAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDARDIDLAVSAARKAFDDGPWPRMTAYERSKILLRFADLVEKHADEVAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSAIYVAKLLHEAGLPAGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGQIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKSRKRAANRVVGDPFLGGIEQGPQVDGEQFKKILKYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEVEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1241 4838 - CmaCh12G000010.1 Cma12g00001 304491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Cma12g00001 535 CDD ALDH_F2BC 52 527 - -
Cma12g00001 535 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 23 535 - -
Cma12g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Cma12g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491
Cma12g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
Cma12g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Cma12g00001 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 23 535 - -
Cma12g00001 535 MobiDBLite consensus disorder prediction 20 40 - -
Cma12g00001 535 SUPERFAMILY ALDH-like 51 530 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00604 Cma-Chr10:2795115 Cma12g00001 Cma-Chr12:1241 0 dispersed
Cma11g00601 Cma-Chr11:2875310 Cma12g00001 Cma-Chr12:1241 0 dispersed
Cma12g00001 Cma-Chr12:1241 Cma20g00289 Cma-Chr20:1399262 3.24E-103 dispersed
Cma11g00104 Cma-Chr11:552767 Cma12g00001 Cma-Chr12:1241 0 transposed
Cma13g00931 Cma-Chr13:7373612 Cma12g00001 Cma-Chr12:1241 4.28E-16 transposed
Cma12g00001 Cma-Chr12:1241 Cma05g00003 Cma-Chr5:17096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00001 K00128 - csv:101202756 973.385