Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00024 ATGGAACTGGAACTCTGTTTCTTCTTTTGCCATGCCGTTTTTACTGTTTTTCCACTCCTCCATCTTGCTTCTGCTACCCTCTCTCCTTCTGGTGTCAACTACGAAGTCGTGGCTTTGATGGCCATCAAAAATGATTTCATAGACCCCCACAATGTTTTGGAGAATTGGGACTCTAATTCAGTGGATCCTTGTAGCTGGAGAATGGTTACATGTTCTCCAGATGGATACGTTTCTGTTCTGGGGCTACCCAGCCAGAGTTTGTCAGGACTCTTATCGCCGGGGATTGGAAACCTCACTAAGTTAGAATCAGTGTTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCATCCATTGGAAAGTTAGAGAACCTCCACACACTTGATCTCTCCAATAATGTATTTAGTGGCCAAATACCCAGTTCCCTTGGGGACTTAAACAAGCTCAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCCGACTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATATAACAACTTGAGTGGCTCCATGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTTCCATCTTCCCGGAGCCGTTTTTGTTTGCCCCAGATGTTCTAGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTTGAGATGATAAGTTTAGCTGTGCATCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCTTTCATGCCCAATGGAAGCGTTGGATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCTAAAATCATCCATCGTGATGTAAAAGCTGCCAACATTCTCCTTGACGAAGATTTTGAGGCCGTAGTTGGAGACTTTGGGTTGGCCAAACTTCTGGATCACAGAGATTCTCATGTGACTACAGCAGTGCGTGGCACGGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATATTGCTTTTGGAATTAATTACTGGTCAAAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAGAAGTTGCATGAGGAAGGAAAGGTGAATGTGATGGTGGATAAGGATCTAAGAGGTAAGTTCGACAGAGTTGAGTTGGAGGAAATGGTCCAGGTGGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCGCAGCACATGGATGCGCCAAGATACCAGCGAGCGTGCGAGAATCCCCCCCCTCAACGGTACTCAGACTATATAGAAGAGTCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1878 44.89 MELELCFFFCHAVFTVFPLLHLASATLSPSGVNYEVVALMAIKNDFIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGLLSPGIGNLTKLESVLLQNNDISGPIPASIGKLENLHTLDLSNNVFSGQIPSSLGDLNKLNYLRLNNNSLTGPCPDSLSKVEGLTLVDLSYNNLSGSMPKISARTFKIVGNPLICGPNNCSSIFPEPFLFAPDVLEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVGSRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHEEGKVNVMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHMDAPRYQRACENPPPQRYSDYIEESSLIVEAMELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 93850 98092 + CmaCh12G000240.1 Cma12g00024 304514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00024 625 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00024 625 Pfam Protein kinase domain 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00024 625 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cma12g00024 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Cma12g00024 625 PANTHER PROTEIN NSP-INTERACTING KINASE 3 9 625 - -
Cma12g00024 625 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Cma12g00024 625 SUPERFAMILY Protein kinase-like (PK-like) 284 579 IPR011009 -
Cma12g00024 625 Gene3D Ribonuclease Inhibitor 32 211 IPR032675 -
Cma12g00024 625 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Cma12g00024 625 SMART serkin_6 300 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00024 625 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Cma12g00024 625 SUPERFAMILY L domain-like 33 195 - -
Cma12g00024 625 Gene3D Transferase(Phosphotransferase) domain 1 377 592 - -
Cma12g00024 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01328 Cma-Chr3:8548885 Cma12g00024 Cma-Chr12:93850 0 dispersed
Cma07g00178 Cma-Chr7:859468 Cma12g00024 Cma-Chr12:93850 0 dispersed
Cma12g00024 Cma-Chr12:93850 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma20g00335 Cma-Chr20:1641714 Cma12g00024 Cma-Chr12:93850 1.06E-53 dispersed
Cma12g00024 Cma-Chr12:93850 Cma05g00027 Cma-Chr5:126553 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68936 PF00069 Pkinase 2.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00024 - - csv:101208885 1128.24