Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00028 ATGCACTTCCTATCCCAACCAACCGCTTCTCACACACACGGAAGGAAGCTGCCAATGAACACTGCATCGCCACTGCTTCCCACATATGGCTTCTTCATCATTTTCATCACCGCTCTTTTCTTGCTTCAGACCACGTCCACACTGGCTAACCCCAGATCCCAAACGGTGAACATATTTTGTTCCACCGTGTTAGAGCATAATACAACGGCTTTTGTGCCAAACTTCGTTGCCACCATGCAAATAATCAGCGATCAAATGCGAACTGGTGGTTTTGGAGTGGCACTGGCAGGGAAGGGGCCGGACGCCAACTACGGCCTCGCTCAATGTTACGGAGATTTGTCGCCGATGGATTGTGTGTTATGTTATGCCGAAGCCCGTACTGTCCTGCCTCAGTGTTTTCCTTCCAATGGTGGCCGAATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATAACGAATATAAGGGGCCTCTGGACAGGGCTGTGTGCGGCAACACCTCCATTACTAGCAACTCCCTTTTTGGGCAGTCGGCCAGGCAGGCTGTGGGCCGAGCAGTTGACATTGCACCCAACAATGGAGGGTATGCCAGAGTTGAAGTGCCTGTCCCTGGAACCTCCAATCTCTCGGTCTACCTGTTGGCTCAGTGCTGGAAGAATTTGAAACGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTGTCCTCAAATGCTTGCCTCAGTCCGAAGCAAGGGCCCTCAACACTGGCTGCTTCATCAGATACTCTAGCGTTGACTTCCTAAATAGGGAAGCTCGAGCTGCAAGGTCCAGAGGCAACATTATAGCAATTGTAATCTCAGTGGTAAGCACGATTGCTGTTTTGGTCGCTGGTGTGGTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGATGAAACGAAAAGGTTCAAATGATGCAAACAAGATGATGAAAACACTCAACAATAGCAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGAATGTTTTGCTGAGGCTAACATGCTTGGACAAGGAGGATTTGGCACTGGAGTTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGACTTCTACAATGAAGTTAACATAATTAGTAGTGTGGAGCACAAAAATTTAGTAAGGTTGCTTGGCTGTAGTTGTTCTGGACCTGAAAGTCTGCTCGTCTATGAATTCCTTCCCAACAAGAGTCTCGACCGCTTCATTTTTGATCGAGACAGAGGCAGATCACTCAATTGGGAGAAGAGATTCGATATTATCGTGGGAACAGTTGAAGGTTTGGCTTACCTGCACGAGAACTCGAAAACCAAGATCATTCACCGAGACATCAAGGCTAGTAACATCTTGCTTGACTCAAAGTTTCGAGCTAAAATTGCTGATTTTGGATTGGCTAGATCCTTTGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCCGGAACCTTGGGGTATATGGCGCCAGAGTACTTGGCTCATGGCCAGCTAACAGAAAAGGCTGATGTCTACAGTTTTGGGGTGGTTTTGCTGGAGACCATCACTGGGATTCAAAACAGTAGGAGCAAAACCTCGGACTACTTGGAAAGCATAGTACTCATTACATGGAAGCATTTTGAATCGGGAACAGTGGAAGGGATATACGACCCGAACCTGATGGTTGATGAGAAGGAGGGAGGTGGGAGCATAAAAGAGGAGATGTTGAGAGTGGTGCACATAGGACTTCTGTGCACTCAGGAGACTGCATCACTGCGACCCACAATGTCAAAGGTACTGCAGATGCTGATGAAGAAGGAAGACAAACTTCCAGCGCCGACCAACCCACCTTTCATGGACGAGAGGACAATGGAACTGAACGACACCAGCGACGCCCCATCCCACTACAACGTCACGGAAGCTTCTTCCACGGCTGCTAGCGTCACCCATAGTTCATTTCATCCCAGTTGTAATTGTAATTGTAAAAACTGGAAAGGAATTAGAGCTCGGTTCATGAAGAAATGTGTAGACGTGGTGAAGGAGGAAGTGGGGTTTGCTATATTTGTGTACACTAATACTGCGTATAATCCAATTATCAGACTGAAAGTATTCAGTCCTACAATTACAATCCAATCCCTCCTCACCCATCTCGGTGGTACCCAAATTAAGGTAGCAAATGACTTCTTTTCATATTCTAGAACATCCCCAGACTTCTGGCTTCAATATTTTGCCTTTTCTCGACGGCAATGCAAACCCCCTTTCGCGCAAGCTGTCACCCATTCCGCAGCTTCCCGACCTTCTTCGTCGTCGGCGGCGGCAGCAGCCTCCTTATTCAGAATCAAGCAGACAAACGGAACCCCAGATTCAATGGCGATCCACCTTGTTTCTGCTTGCAAATATGTCCTATTTTCAGTCCTCGCTATTCTTCTGCTACACCTAACTTCGGCTGTGGGAAAGCCAAGAGATCAAACTGTGAAAGTGATTTGCGGGAAAGAACTAGAGCACAACACCACGGCGTACGTTCCAAATTTTTTTGGTTCAATGGAAAAAGTAAGACAACAAATCACAACTTCGGGATTTGGAACGGCGGGTACAGGAATGGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGAAGATCTCTCATCCCACGAATGTGTGCTGTGTCATTCTCAAGCACGTACGGTGATTCCCCAGTGCTTCCCTTTCAACGGTGGCCGTGCATTCATCGATGGCTGCTTCTTGAGATTCGAAAACTATAGCTTTTTTGACGAATACAAAGGACCCGAAGACACTGCAGTTTGCGGGAACCTTACCCAAAATGACCCCAACTATAGACAAGCAGCCAGGGATGCGGTGATGCAAGTGGTCAACGGTGCACCAAGCAACAAAGGCTTTGCAAAAGCTCAAGTGGCTGTGGCCGGGATGGCGAAGGAGTCTGCCGTGTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAGCCACAGCTCTTGCAGCTCGTGTTTGAAAATTGCTTCTGCCTCGATGCTGCAGCAGTGTTTACCTCGATTGGAAGGGCGAGCATTGTACACAGGCTGCTTCATGAGATACTCAAACACAGACTTTCTCAATAAGGACATCAAAGATAGTTCCAAAGGTGGGACAATAACTGCGGGGGTCATCATTTCAATTTTGAGTTCTGTTGTTGTTATGATAATCGTAGCGGTGATCGGTACTTTTATCTGGCGGCGCAGATACATTCAAAATAAAAGGAAAGGAGGTTCAGCTGATGTGAAGAAGTTGGCGAAAACTCTTCAAGATAGTAATTTGAACTTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTCGATAACAAGATTGGACAAGGGGGGTTTGGCTCTGTTTATAGGGGAACTCTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTTCAATGAAGTCAACATGATCAGCAGTGTCGAACATAAAAATCTGGTTAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTCCTGCCAAACAAGAGTCTCGATCGCTTCATTTTTGGTGCCAATAACAGCAAAGCTCTTGATTGGGATAAGAGATATAACATCATCATTGGCACGGTTGAAGGTTTAATATATCTACATGAAAATCCAGAGAACAAAATCATACACAGGGATATAAAGGCGAGTAATATTTTGCTCGATCTAAAGCTTCAAGCAAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAGAACAAGAGTCATATTAGCACCGCCATTGCAGGAACTCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGTCAGCTAACAGAAAAGGTCGACGTCTATAGCTTTGGGGTGCTTTTGTTAGAAATAGTTACAGGATTCCAATACAGTGGCATCCAAGTCTCGGGAAATATCGAAAGTCTTGTCACTGCTATGTGGAGACATTTCCAAGCAGGCACGGTTGAGAGGCTATTTGATTCAAATCTAAATCTTCGGAATCACTACAACAAAAAAGTAAAGGACGAGGTATTGAGAGTGGTGCACATAGGGCTCTTATGCATTCAGGAGGTTCCATCTCTTCGACCAACAATGTCAAAGGTACTACGAATGCTGACCATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCGCCTTTCATGGATGAGATGACCATGGAACTTGATGGCTCATGCAAGGACTCGCAATATTGTTCTATTACAGAGGGCTCTTATTCAACTGCCACAGTCAGCCATAGTTCTTTTCATCCAAGATAA 4386 45.92 MHFLSQPTASHTHGRKLPMNTASPLLPTYGFFIIFITALFLLQTTSTLANPRSQTVNIFCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVALAGKGPDANYGLAQCYGDLSPMDCVLCYAEARTVLPQCFPSNGGRIFLDGCFMRAENYSFYNEYKGPLDRAVCGNTSITSNSLFGQSARQAVGRAVDIAPNNGGYARVEVPVPGTSNLSVYLLAQCWKNLKRSSCTSCLQNASASVLKCLPQSEARALNTGCFIRYSSVDFLNREARAARSRGNIIAIVISVVSTIAVLVAGVVIGIYIWNNRYVKMKRKGSNDANKMMKTLNNSSLNFKYSTLEKATECFAEANMLGQGGFGTGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDRDRGRSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKFRAKIADFGLARSFEEDVSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETITGIQNSRSKTSDYLESIVLITWKHFESGTVEGIYDPNLMVDEKEGGGSIKEEMLRVVHIGLLCTQETASLRPTMSKVLQMLMKKEDKLPAPTNPPFMDERTMELNDTSDAPSHYNVTEASSTAASVTHSSFHPSCNCNCKNWKGIRARFMKKCVDVVKEEVGFAIFVYTNTAYNPIIRLKVFSPTITIQSLLTHLGGTQIKVANDFFSYSRTSPDFWLQYFAFSRRQCKPPFAQAVTHSAASRPSSSSAAAAASLFRIKQTNGTPDSMAIHLVSACKYVLFSVLAILLLHLTSAVGKPRDQTVKVICGKELEHNTTAYVPNFFGSMEKVRQQITTSGFGTAGTGMGPDASYGLAQCHEDLSSHECVLCHSQARTVIPQCFPFNGGRAFIDGCFLRFENYSFFDEYKGPEDTAVCGNLTQNDPNYRQAARDAVMQVVNGAPSNKGFAKAQVAVAGMAKESAVYALGQCWRSLSHSSCSSCLKIASASMLQQCLPRLEGRALYTGCFMRYSNTDFLNKDIKDSSKGGTITAGVIISILSSVVVMIIVAVIGTFIWRRRYIQNKRKGGSADVKKLAKTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGSVYRGTLPDGREIAVKRFFFDNRHRAADFFNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFGANNSKALDWDKRYNIIIGTVEGLIYLHENPENKIIHRDIKASNILLDLKLQAKIADFGLARSFQENKSHISTAIAGTLGYMAPEYLAYGQLTEKVDVYSFGVLLLEIVTGFQYSGIQVSGNIESLVTAMWRHFQAGTVERLFDSNLNLRNHYNKKVKDEVLRVVHIGLLCIQEVPSLRPTMSKVLRMLTMEEEEHLPPPTKPPFMDEMTMELDGSCKDSQYCSITEGSYSTATVSHSSFHPR 1461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 105679 113977 - CmaCh12G000280.1 Cma12g00028 304518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00028 1461 Pfam Protein kinase domain 1133 1405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 Pfam Protein kinase domain 347 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 CDD STKc_IRAK 1138 1408 - -
Cma12g00028 1461 SUPERFAMILY Protein kinase-like (PK-like) 1116 1426 IPR011009 -
Cma12g00028 1461 ProSiteProfiles Protein kinase domain profile. 345 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 ProSiteProfiles Gnk2-homologous domain profile. 837 938 IPR002902 -
Cma12g00028 1461 CDD STKc_IRAK 351 620 - -
Cma12g00028 1461 ProSiteProfiles Gnk2-homologous domain profile. 160 265 IPR002902 -
Cma12g00028 1461 ProSiteProfiles Gnk2-homologous domain profile. 943 1050 IPR002902 -
Cma12g00028 1461 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 SMART serkin_6 1132 1409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 Pfam Salt stress response/antifungal 69 152 IPR002902 -
Cma12g00028 1461 Pfam Salt stress response/antifungal 957 1047 IPR002902 -
Cma12g00028 1461 Pfam Salt stress response/antifungal 855 936 IPR002902 -
Cma12g00028 1461 Pfam Salt stress response/antifungal 171 261 IPR002902 -
Cma12g00028 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1253 1265 IPR008271 GO:0004672|GO:0006468
Cma12g00028 1461 Gene3D Phosphorylase Kinase; domain 1 1094 1207 - -
Cma12g00028 1461 Gene3D Phosphorylase Kinase; domain 1 306 417 - -
Cma12g00028 1461 ProSiteProfiles Protein kinase domain profile. 1132 1409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00028 1461 Gene3D Transferase(Phosphotransferase) domain 1 418 630 - -
Cma12g00028 1461 Gene3D Transferase(Phosphotransferase) domain 1 1208 1416 - -
Cma12g00028 1461 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 816 1440 - -
Cma12g00028 1461 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 33 650 - -
Cma12g00028 1461 SUPERFAMILY Protein kinase-like (PK-like) 330 640 IPR011009 -
Cma12g00028 1461 ProSiteProfiles Gnk2-homologous domain profile. 53 154 IPR002902 -
Cma12g00028 1461 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 816 1440 - -
Cma12g00028 1461 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 650 - -
Cma12g00028 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Cma12g00028 1461 ProSitePatterns Protein kinases ATP-binding region signature. 1138 1160 IPR017441 GO:0005524
Cma12g00028 1461 Gene3D - 162 265 IPR038408 -
Cma12g00028 1461 Gene3D - 837 938 IPR038408 -
Cma12g00028 1461 Gene3D - 948 1050 IPR038408 -
Cma12g00028 1461 Gene3D - 52 154 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00034 Cma-Chr5:152841 Cma12g00028 Cma-Chr12:105679 0 dispersed
Cma12g00028 Cma-Chr12:105679 Cma14g00663 Cma-Chr14:3324305 1.14E-150 dispersed
Cma12g00028 Cma-Chr12:105679 Cma18g00785 Cma-Chr18:6945003 1.07E-142 wgd
Cma12g00028 Cma-Chr12:105679 Cma05g00032 Cma-Chr5:148546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68937 PF00069 Pkinase 2.90E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00028 - - cmax:111496519 1350.88