Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00037 ATGAGGGACCAAACCTCTGGCTTGCGATTTAACGACTCCTCTTGTTGCTTGAAGCGGAAAAGACCTCCCAAGATTGAGATCCCTAACGTCTTACGAGAGATTCAAGCCGGGAAGCTTGAAGGCACCACTCCCCGTACCGATTCCCTCTCCTCTGCTGACTTCGCGGATCATGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGACACTCACAGGATCATTTCTTGCATGAAAGGCCACTTCAATGATGCCTTTTTTGGCGTTTATGATGGCCATGGAGGCAGGAAGGCTGCCAAATTTGTTGCATTAAATTTGCACAAGAACATACTTGAAGTGGTGGCCAATTGCACGGAATCTGCACAGAAGGTGGAAGCAATTAAAGCTGCTTTCTTGAAAACGGACGGGGACTTCTTGAATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACAAGGAGAAGAACTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGAGGAGTCGCTGAAGCAGTCACAAAAGACCATAGAGTTGAACAGGAGGATGAAAGGAAACGAATAGAGGACAAGGGTGGATACGTTGAGATTCACAGGGGGGCATGGAGAGTTCATGGAGTTCTTTCTGTTTCTAGAAGCATTGGGGATGCTCATTTGAAGGACTGGGTACTGGCCGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAAGACATGGAATTTCTTGTTCTAGCCACTGATGGATTATGGGAAAAGGTTGGGAACCAAGAGACCGTCGATGTCGTGACACGACTGAGGTTGATGGATAGTTTTGGGCTACCAAAATGTTCCTTGAGAAGCACTAGCCATGCCCATTGCTCTGGGAACCCAAGTCCATCAAAACTGCGGAGAGTTTCTTTGGTCACGCAACCGAAAGGAGGGGGGATGGACCAATCTCCAATCTGTGACAAGGCAATCGATAGCTCTGAAGAAGCTGAATATGACTATTCTTGTGAAATTGAAAGTCCTAGAACAAAATCAAGGAGAATATCATTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATAATGATAGCTATAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATCTAGCTCTAAGTAGAGGTAGCCTGGATGACATTACCGTAATAATTGTCGACTTAAGCCACTTTAGGTGCGAGAGTCGGTCTGAGAATGTTCATTCCTTGCCAAGTCACTTTTCCCAACAGTTCCACTGCAAAGTGGAGGAGAAACCCAGACAAACTCCATTTTCAACTTCCAAGCACAATCAGCCAGCTTTCTTGGATTCGTACCAAGCCATGCATGACTCCATCGGAATTCCTGCTTGCTTCTCATTTGGGGAGAGGCCAAGTAATGATCCAGCTTCAGTAATCAGGTCAGGTCAGAGTGTGTTTATGTCAGTATATCAAACAAAGATCGTTGGTCAGTGTCGTCTCATCACAGTCACTTGGTGTAAGAATCTGTTACTTCATGGTCTTTCCATCTGTGTTCAAGGACCAGAAGGAAGCCAGCAATATCAGTGTAAGGTTGAGATGAAGCCATGGTACTTCTGGAGAAAACAAGGTTCTAAGCACTTTGAAGTCGATGGTCGAGCTGTGGATGTATTCTGGGACCTCAAGAGTGCAAAATTCAATGGAGAGACAGAGCCACAGTCGGATTACTACGTGGCCGTTGTGTGTGAAGAAGAAGTTGTTTTACTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAGACAGGTTGTCGGCCAGCTTTGATTGAACCCACTCTAGTTTCAAAGAAGGAACATGTATTTGGGAAGAAAATGTTCTCCACCAGAATCCAGTTCCATGAGAAAGGCAAGTTCCACACCATCTCAATTGAGTTCATCAACATCAATAATCCCAGTTTTTCTGATTCATTCGATCCAGAACTGGAGATGAGGATCGACGGGCAACCAGCAATCAAAATTAAGCACCTTCACTGGAAGTTCAGAGGCAATGAATCTGTAATAATCAGCAGAACAAGACTAGAAGTTTACTGGGATGTCCATGATTGGCTGTTTGGTTCAGGTTCCAGGTACGGGCTATTCATATTCAGGCCAATGTCATCATGGTCTGAATCTCCATCGTCATCACTTGCATCAACGACATCGCTACCTGCTCCATCCTCTTCTTTAATACCAACGGGAATGTCCATTAGAGAAGTGATTTCTACTTCTGGGGAGGATGAAAATGCAGCGGCAGGAGTGTCATCCAAATTCTGCTTATTTCTGTATGCTTGGAAGATGGAATGA 2355 45.05 MRDQTSGLRFNDSSCCLKRKRPPKIEIPNVLREIQAGKLEGTTPRTDSLSSADFADHVGVFSVKGKKRFMEDTHRIISCMKGHFNDAFFGVYDGHGGRKAAKFVALNLHKNILEVVANCTESAQKVEAIKAAFLKTDGDFLNLGLGSGVCCVTALIQGEELVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIEDKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDSFGLPKCSLRSTSHAHCSGNPSPSKLRRVSLVTQPKGGGMDQSPICDKAIDSSEEAEYDYSCEIESPRTKSRRISLVRHKKMKTESSPKENNDSYRKRPTSSRLVAACKELVDLALSRGSLDDITVIIVDLSHFRCESRSENVHSLPSHFSQQFHCKVEEKPRQTPFSTSKHNQPAFLDSYQAMHDSIGIPACFSFGERPSNDPASVIRSGQSVFMSVYQTKIVGQCRLITVTWCKNLLLHGLSICVQGPEGSQQYQCKVEMKPWYFWRKQGSKHFEVDGRAVDVFWDLKSAKFNGETEPQSDYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKFHTISIEFININNPSFSDSFDPELEMRIDGQPAIKIKHLHWKFRGNESVIISRTRLEVYWDVHDWLFGSGSRYGLFIFRPMSSWSESPSSSLASTTSLPAPSSSLIPTGMSIREVISTSGEDENAAAGVSSKFCLFLYAWKME 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 136553 141610 + CmaCh12G000370.1 Cma12g00037 304527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00037 784 Pfam Plant protein of unknown function (DUF868) 487 782 IPR008586 -
Cma12g00037 784 MobiDBLite consensus disorder prediction 357 374 - -
Cma12g00037 784 Pfam Protein phosphatase 2C 58 272 IPR001932 -
Cma12g00037 784 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 464 784 - -
Cma12g00037 784 ProSiteProfiles PPM-type phosphatase domain profile. 57 408 IPR001932 -
Cma12g00037 784 SMART PP2C_4 47 406 IPR001932 -
Cma12g00037 784 PANTHER EXPRESSED PROTEIN 464 784 IPR008586 -
Cma12g00037 784 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Cma12g00037 784 SUPERFAMILY PP2C-like 54 409 IPR036457 -
Cma12g00037 784 Gene3D - 45 415 IPR036457 -
Cma12g00037 784 MobiDBLite consensus disorder prediction 350 376 - -
Cma12g00037 784 CDD PP2Cc 57 408 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01108 Cma-Chr4:5711935 Cma12g00037 Cma-Chr12:136553 2.58E-70 dispersed
Cma12g00037 Cma-Chr12:136553 Cma13g00503 Cma-Chr13:5369815 9.73E-76 dispersed
Cma12g00037 Cma-Chr12:136553 Cma05g00046 Cma-Chr5:185418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00037 - - csv:101209288 1181.78