Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00038 ATGGCTTCAATGCCTATAGTTACATTTGGTTTTCGATCCGCTGAGTTTTCAGGTTCCTCCAAGCTCCACCTTCAAAAAATGCGCTCTCGTTATGTGGTAAATCAGAGATTTCTTGCATCCAAATCTCTAAGACGCACCATATCTTCCTCCGATAGGTTTCATCTTCGACACTCTAATTGCGATCTCGATGCGTTTGCAATTCCGGTCTATACGTCTGATTTAGTGGTTGATAAGCTTCATCGACTTGTTTTGGAGTTCAAGCCTCTCTTGAAGCCGATTGATCGAGTGAAACGACTGTTGCAGTATGCAGCGATTCTTGATCCTTCGGGTGAATCGATTCGACTACCAGAGAATAGAGTGAGAGGGTGTGCGACGCAAGTATGGTTGGATGTAAGAATTGACGAGTTTGATCGAATGAGATTCAAAGCTGACAGCGATTCGGAGATTGCGAAGGGATACTGTTCGTGTTTGATTTGGATGTTGGAGGGCGCGAAGCCATGTGAGGTTTTGAAGATGAGGAGCGATGATTTGGAGGCTGTGAATGTTGGATTACATGGAAAAGCGATATCTAGGGTGAATACTTGGCAAAATGTGTTGATGAGCATGCAAATGAGAACGAACGCTTTGCTCATTCTCCAAACTCTAATTCTTCGTTTAGATCTCTCTTCTCCTTCTATTTTCAATTCTTGCGATTTGTGGATCTCGAGCTTAAACCAAACCAACGGGAGAGAAATGTCAAAACCGTGGGGCGGAATTGGAGCCTGGGCTGCTGATGCCGAGCGTGCTGAGGCTGAGGAACGAGAGGCGCAAGCTGCTGCGGCCGCCTCCCAAGCAGAATCGAAGAATTTCCCTAGCCTTAAGGAAGCTGTCAACACCAAGCCCAAGAAGAAGAAGATGACGCTGTCGGAATTCACTATGGGGACCTTGACGGGTCCGGGCGCCGGCAGTAGGCAAACAGACAGCAAGGGCTTGACGCCGGAGGAGATGCTTCGACTTCCGACTGGTCCCAAAGACCGTTCTGGTGAAGAAATGCGTCCTGGCCGCCTTGGTGGGGGATTTCCCACTTATGATCGGCACAGTATGCCTGCTGGTCGATTTCGGGACCGTGACGAAGGCGATGGGTCTTGGGGTGGTGGTCGACGATCGTTTGGTGGGTTCGATGATGATCGTAGGGATCCACCTCCTAGGGCTTCCAATTTCGATCAACCTTCAAGGGCTGACGAGGTGGATAATTGGGCAATGACTAAGAAATCTCCCACATTGGCTTCAGAGCGACAGAATAGGTACGGGTCGCTAGGCGGTGGCATGGGTGGAATTGCATCCAGGGCAGACGAGGTCGATAGCTGGGCCAGTGCGAAAAAACCTGTTCCATCGAGATCCTCCACTTTTGGTTCTGGTTACCGTGACCGTGAGGTGAATGAGCATGATCGCTGGACTAGAGGCAGTTCACGTGATAGTGACACAGAACGACCCCGGTTAGTATTGGATCGACCCAAAGCTAATCTCCTTACAAATGAAGCAACAAGGTCGAACAAGCCAAGTCCTTTTGGAGCAGCAAGGCCAAGAGAGGAAGTTTTGGCTGAGAAGGGGTTGGATTGGAAGAAGCTGGATACAGAAATTGAGGCCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGACCTTCGAGTGCTCAATCGAGCCGTTCAGAGGGTCCAGGATTGCAGGGCGTAGAAAATGTGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAGCCTAGGGAGGTTTTGCTGGAGGAACGTGGCAAGGACTGGCGGAAGATAGATCTGCAACTTGAGCGTCGTGCTGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTTCTAAGAAAGGAACTTGAGAAAGGCTTATCTCTGAATGCTAAGAAAGAATCGATGCAAGAATCTGCCGTAGAGATACAAAATCTGCGTGACAGAATAAATAAAAAAGAATGTGAACTGGAGGCGCTGGTCCTTGATTTGGATGATAAGGTTCGCTTCGGGAAGAAAGCAGCTGAGAGACCTGGCTCTGGAGCAGGTAGGGCTGCTGTCTTTCCCGAAAGACAATCTTCTCAAGGATCCTTTGATGAGTCCAGAAGTTTCGAGTCTATGGAACGGCCTCGATCACGTGGCACTCCAGATGTGTGGAGTAGATCTGCTGAGGATGGAAAACCAATACAAGGCGCCAGAGATGGAGGATTTTTGGGCAGCAGAGACATGAACAGGTCGAGGGATAGATGCTCTGGAAATTGGAGTGAGAGAGTACTACTGATGTGGTGCCAAACTTTTGTTACCCCCCCCTTCTTCAAACTATGTAAAATTGCTATTTCTTATTTTTGTTGA 2391 48.64 MASMPIVTFGFRSAEFSGSSKLHLQKMRSRYVVNQRFLASKSLRRTISSSDRFHLRHSNCDLDAFAIPVYTSDLVVDKLHRLVLEFKPLLKPIDRVKRLLQYAAILDPSGESIRLPENRVRGCATQVWLDVRIDEFDRMRFKADSDSEIAKGYCSCLIWMLEGAKPCEVLKMRSDDLEAVNVGLHGKAISRVNTWQNVLMSMQMRTNALLILQTLILRLDLSSPSIFNSCDLWISSLNQTNGREMSKPWGGIGAWAADAERAEAEEREAQAAAAASQAESKNFPSLKEAVNTKPKKKKMTLSEFTMGTLTGPGAGSRQTDSKGLTPEEMLRLPTGPKDRSGEEMRPGRLGGGFPTYDRHSMPAGRFRDRDEGDGSWGGGRRSFGGFDDDRRDPPPRASNFDQPSRADEVDNWAMTKKSPTLASERQNRYGSLGGGMGGIASRADEVDSWASAKKPVPSRSSTFGSGYRDREVNEHDRWTRGSSRDSDTERPRLVLDRPKANLLTNEATRSNKPSPFGAARPREEVLAEKGLDWKKLDTEIEAKRTSRPTSAHSSRPSSAQSSRSEGPGLQGVENVVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLERRAVDRPETEEEKMLKEEIDVLRKELEKGLSLNAKKESMQESAVEIQNLRDRINKKECELEALVLDLDDKVRFGKKAAERPGSGAGRAAVFPERQSSQGSFDESRSFESMERPRSRGTPDVWSRSAEDGKPIQGARDGGFLGSRDMNRSRDRCSGNWSERVLLMWCQTFVTPPFFKLCKIAISYFC 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 142906 148905 - CmaCh12G000380.1 Cma12g00038 304528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00038 796 Pfam Fe-S metabolism associated domain 85 204 IPR003808 -
Cma12g00038 796 Gene3D - 75 211 - -
Cma12g00038 796 Coils Coil 642 676 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 522 548 - -
Cma12g00038 796 Pfam Plant specific eukaryotic initiation factor 4B 245 749 IPR010433 GO:0003743
Cma12g00038 796 MobiDBLite consensus disorder prediction 549 568 - -
Cma12g00038 796 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 245 760 IPR010433 GO:0003743
Cma12g00038 796 SUPERFAMILY SufE/NifU 77 209 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 715 733 - -
Cma12g00038 796 Coils Coil 259 281 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 468 496 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 361 376 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 687 760 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 303 323 - -
Cma12g00038 796 MobiDBLite consensus disorder prediction 273 590 - -
Cma12g00038 796 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 245 760 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00325 Cma-Chr2:1568498 Cma12g00038 Cma-Chr12:142906 5.71E-30 dispersed
Cma12g00038 Cma-Chr12:142906 Cma13g00762 Cma-Chr13:6614008 8.04E-45 dispersed
Cma20g00766 Cma-Chr20:3618353 Cma12g00038 Cma-Chr12:142906 4.56E-23 dispersed
Cma12g00038 Cma-Chr12:142906 Cma18g00198 Cma-Chr18:1035052 1.24E-43 wgd
Cma12g00038 Cma-Chr12:142906 Cma18g00757 Cma-Chr18:6766559 6.22E-50 wgd
Cma12g00038 Cma-Chr12:142906 Cma05g00048 Cma-Chr5:192132 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00038 - - csv:101206526 771.541