Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00038 | ATGGCTTCAATGCCTATAGTTACATTTGGTTTTCGATCCGCTGAGTTTTCAGGTTCCTCCAAGCTCCACCTTCAAAAAATGCGCTCTCGTTATGTGGTAAATCAGAGATTTCTTGCATCCAAATCTCTAAGACGCACCATATCTTCCTCCGATAGGTTTCATCTTCGACACTCTAATTGCGATCTCGATGCGTTTGCAATTCCGGTCTATACGTCTGATTTAGTGGTTGATAAGCTTCATCGACTTGTTTTGGAGTTCAAGCCTCTCTTGAAGCCGATTGATCGAGTGAAACGACTGTTGCAGTATGCAGCGATTCTTGATCCTTCGGGTGAATCGATTCGACTACCAGAGAATAGAGTGAGAGGGTGTGCGACGCAAGTATGGTTGGATGTAAGAATTGACGAGTTTGATCGAATGAGATTCAAAGCTGACAGCGATTCGGAGATTGCGAAGGGATACTGTTCGTGTTTGATTTGGATGTTGGAGGGCGCGAAGCCATGTGAGGTTTTGAAGATGAGGAGCGATGATTTGGAGGCTGTGAATGTTGGATTACATGGAAAAGCGATATCTAGGGTGAATACTTGGCAAAATGTGTTGATGAGCATGCAAATGAGAACGAACGCTTTGCTCATTCTCCAAACTCTAATTCTTCGTTTAGATCTCTCTTCTCCTTCTATTTTCAATTCTTGCGATTTGTGGATCTCGAGCTTAAACCAAACCAACGGGAGAGAAATGTCAAAACCGTGGGGCGGAATTGGAGCCTGGGCTGCTGATGCCGAGCGTGCTGAGGCTGAGGAACGAGAGGCGCAAGCTGCTGCGGCCGCCTCCCAAGCAGAATCGAAGAATTTCCCTAGCCTTAAGGAAGCTGTCAACACCAAGCCCAAGAAGAAGAAGATGACGCTGTCGGAATTCACTATGGGGACCTTGACGGGTCCGGGCGCCGGCAGTAGGCAAACAGACAGCAAGGGCTTGACGCCGGAGGAGATGCTTCGACTTCCGACTGGTCCCAAAGACCGTTCTGGTGAAGAAATGCGTCCTGGCCGCCTTGGTGGGGGATTTCCCACTTATGATCGGCACAGTATGCCTGCTGGTCGATTTCGGGACCGTGACGAAGGCGATGGGTCTTGGGGTGGTGGTCGACGATCGTTTGGTGGGTTCGATGATGATCGTAGGGATCCACCTCCTAGGGCTTCCAATTTCGATCAACCTTCAAGGGCTGACGAGGTGGATAATTGGGCAATGACTAAGAAATCTCCCACATTGGCTTCAGAGCGACAGAATAGGTACGGGTCGCTAGGCGGTGGCATGGGTGGAATTGCATCCAGGGCAGACGAGGTCGATAGCTGGGCCAGTGCGAAAAAACCTGTTCCATCGAGATCCTCCACTTTTGGTTCTGGTTACCGTGACCGTGAGGTGAATGAGCATGATCGCTGGACTAGAGGCAGTTCACGTGATAGTGACACAGAACGACCCCGGTTAGTATTGGATCGACCCAAAGCTAATCTCCTTACAAATGAAGCAACAAGGTCGAACAAGCCAAGTCCTTTTGGAGCAGCAAGGCCAAGAGAGGAAGTTTTGGCTGAGAAGGGGTTGGATTGGAAGAAGCTGGATACAGAAATTGAGGCCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGACCTTCGAGTGCTCAATCGAGCCGTTCAGAGGGTCCAGGATTGCAGGGCGTAGAAAATGTGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAGCCTAGGGAGGTTTTGCTGGAGGAACGTGGCAAGGACTGGCGGAAGATAGATCTGCAACTTGAGCGTCGTGCTGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTTCTAAGAAAGGAACTTGAGAAAGGCTTATCTCTGAATGCTAAGAAAGAATCGATGCAAGAATCTGCCGTAGAGATACAAAATCTGCGTGACAGAATAAATAAAAAAGAATGTGAACTGGAGGCGCTGGTCCTTGATTTGGATGATAAGGTTCGCTTCGGGAAGAAAGCAGCTGAGAGACCTGGCTCTGGAGCAGGTAGGGCTGCTGTCTTTCCCGAAAGACAATCTTCTCAAGGATCCTTTGATGAGTCCAGAAGTTTCGAGTCTATGGAACGGCCTCGATCACGTGGCACTCCAGATGTGTGGAGTAGATCTGCTGAGGATGGAAAACCAATACAAGGCGCCAGAGATGGAGGATTTTTGGGCAGCAGAGACATGAACAGGTCGAGGGATAGATGCTCTGGAAATTGGAGTGAGAGAGTACTACTGATGTGGTGCCAAACTTTTGTTACCCCCCCCTTCTTCAAACTATGTAAAATTGCTATTTCTTATTTTTGTTGA | 2391 | 48.64 | MASMPIVTFGFRSAEFSGSSKLHLQKMRSRYVVNQRFLASKSLRRTISSSDRFHLRHSNCDLDAFAIPVYTSDLVVDKLHRLVLEFKPLLKPIDRVKRLLQYAAILDPSGESIRLPENRVRGCATQVWLDVRIDEFDRMRFKADSDSEIAKGYCSCLIWMLEGAKPCEVLKMRSDDLEAVNVGLHGKAISRVNTWQNVLMSMQMRTNALLILQTLILRLDLSSPSIFNSCDLWISSLNQTNGREMSKPWGGIGAWAADAERAEAEEREAQAAAAASQAESKNFPSLKEAVNTKPKKKKMTLSEFTMGTLTGPGAGSRQTDSKGLTPEEMLRLPTGPKDRSGEEMRPGRLGGGFPTYDRHSMPAGRFRDRDEGDGSWGGGRRSFGGFDDDRRDPPPRASNFDQPSRADEVDNWAMTKKSPTLASERQNRYGSLGGGMGGIASRADEVDSWASAKKPVPSRSSTFGSGYRDREVNEHDRWTRGSSRDSDTERPRLVLDRPKANLLTNEATRSNKPSPFGAARPREEVLAEKGLDWKKLDTEIEAKRTSRPTSAHSSRPSSAQSSRSEGPGLQGVENVVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLERRAVDRPETEEEKMLKEEIDVLRKELEKGLSLNAKKESMQESAVEIQNLRDRINKKECELEALVLDLDDKVRFGKKAAERPGSGAGRAAVFPERQSSQGSFDESRSFESMERPRSRGTPDVWSRSAEDGKPIQGARDGGFLGSRDMNRSRDRCSGNWSERVLLMWCQTFVTPPFFKLCKIAISYFC | 796 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 142906 | 148905 | - | CmaCh12G000380.1 | Cma12g00038 | 304528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00038 | 796 | Pfam | Fe-S metabolism associated domain | 85 | 204 | IPR003808 | - | |
Cma12g00038 | 796 | Gene3D | - | 75 | 211 | - | - | |
Cma12g00038 | 796 | Coils | Coil | 642 | 676 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 522 | 548 | - | - | |
Cma12g00038 | 796 | Pfam | Plant specific eukaryotic initiation factor 4B | 245 | 749 | IPR010433 | GO:0003743 | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 549 | 568 | - | - | |
Cma12g00038 | 796 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 245 | 760 | IPR010433 | GO:0003743 | |
Cma12g00038 | 796 | SUPERFAMILY | SufE/NifU | 77 | 209 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 715 | 733 | - | - | |
Cma12g00038 | 796 | Coils | Coil | 259 | 281 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 468 | 496 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 361 | 376 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 687 | 760 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 303 | 323 | - | - | |
Cma12g00038 | 796 | MobiDBLite | consensus disorder prediction | 273 | 590 | - | - | |
Cma12g00038 | 796 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 | 245 | 760 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00325 | Cma-Chr2:1568498 | Cma12g00038 | Cma-Chr12:142906 | 5.71E-30 | dispersed | |
Cma12g00038 | Cma-Chr12:142906 | Cma13g00762 | Cma-Chr13:6614008 | 8.04E-45 | dispersed | |
Cma20g00766 | Cma-Chr20:3618353 | Cma12g00038 | Cma-Chr12:142906 | 4.56E-23 | dispersed | |
Cma12g00038 | Cma-Chr12:142906 | Cma18g00198 | Cma-Chr18:1035052 | 1.24E-43 | wgd | |
Cma12g00038 | Cma-Chr12:142906 | Cma18g00757 | Cma-Chr18:6766559 | 6.22E-50 | wgd | |
Cma12g00038 | Cma-Chr12:142906 | Cma05g00048 | Cma-Chr5:192132 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00038 | - | - | csv:101206526 | 771.541 |