Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00046 | ATGGCTTCCTTATCTCCTTGTCGCCCAAATTTTATGTTCTCTTCATTTCCGAACCGTGTTCCGACCTCAAATCCTCTATTTCATGCGGTCCAATTCCGAGGTTTATCCCACCACAAGCCCTCCCTTCGCGGTTCCCTTGCCGTTGCGAGATTCGGGTTTAAACCCGAGTTCTTGCCTGACCCAGATAACGCCGAGGGCTTTGTGAGGGAGTTGTTCGGTAAAGCTGAGCGCGTTCTGTATACGATAGCCGACGCCGCCGTGTCTGCTTCGCCGGAAGATATGACCACCGCCAAGCAAACTGAGGATTGGTTTACGGGGATTACCAATTACATGGAGAGCGTCCTTAAAATTCTTGAGAATGGACTTTCTACTCTGCATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACATTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCAATGCGTTCGTTGCAACCGCAAGTAAAGGCCGTTCAGCAACGTTATGCCGGGGATCAGGAGAGGATTCAAATTGAAACTGCTCGACTCTACAAATTAGCTGGAATAAACCCGTTTGCAGGATGCCTGCCTACGTTGGCTACAATCCCCGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAATGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCATCTCTGGCTGGTCCAACTACGATCGTTTCTCGACAAAGTGGGAGTGGTATCTCTTGGCTCTTCCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCATATCTTGTCTTGCCTGTGTTGCTGGTTGTGTCGCAGTACATCTCGGTTCAGATTATGCAATCGACGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGCCATAACGCAGTTCCTACCGTTAATGATCGGATATTTTGCACTTTCTGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTCAGGTGGTGTAAAAACCCCGGACAAACGGTTCATCGATGAAAGCATCAAACAAGAACAAGCCCAAGTCCAGATCCAATCGTCCGAGTTAAAGTCAGTTTCGATGAGCACAGTAGCCAGAGAATCAGAGAAGCCAACAGCAGAAGGGGTAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATAAGACAGCAAAGAGAAGAAGAAAAGAGGAAAGCTGAAGAGGCAGCCAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAGCTGCTAGATTTGTTGTGAATGGCAGTCTTTCTAGACAGGATGTGGAGGAAGTTCAAAACTCCATGTCCACATCTACTATGCTGCATAGAACCGATGTGGACGACAAGGTTAGCGATACAAGCGAGCATTTGCCAAGTGTAACTCAAGAAGAGAACGTAGTCGAGACGTACACCGGTGTGGGCAAGGATGCCAAACTAAATGGAGAAGATCAAGGAGAGCAGCGAGTACTCTGGATAATAGAGCAGGAAAACCAATTGTTTTACGAAGTTCGATACCGTGGAGCGTCGGATCGGAGAACGAACACAGCCATGGCAAACCCCATTGTTCTTCTCATAACCTTCCTTCTTCTTCTCCATATGTACTCTGGTTCTTCCTCTCCAGCCGCCGATCCTGAACAAGTCGTTGAAGAAGTTCTCACGAGCATCAACAATGCAACAAAAAGAAGGAACTTGGGGTTCCTCTCCTGCGGAACTGGAAACCCAATTGATGACTGTTGGAGGTGCGACCCCGATTGGGAGAAGAATCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGGGAGCCATCGGCGGCAGAAATGGAAAGTTCTACATTGTCACTGACCCATCTGACAAGGACGTGGTGAACCCAAAACCAGGAACTCTCCGCCATGCCGTAATCCAAAAAGAACCTTTATGGATCACCTTCAAACAAGACATGGTCATCAAATTAAAAGCAGAGCTGATCATGAACTCTTTCAAAACCATCGACGGTCGCGGCAGATCAGTCCACATCGCCGGAGGGCCATGCATTACAATTCAGTACGTGACGAACATTATAATCCACGGCATTAACATTCACGACTGCAAGCAAGGAGGGAATATGTACATTAGAGATTCGCCGGACCATTACGGTTGGAGGACTCTGTCGGACGGTGATGGGGTTTCGATATTTGGGGGCAGCCATATTTGGATCGACCATTGCTCGCTGTCGAATTGCCAAGATGGGTTGATTGATGCGATTCGTGGGTCTACGGCTATCACTATTTCAAACAATTATATGACCCACCATAACAAAGTTATGCTTTTGGGACATAGTGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGCGAGGGGCTGGTGCAAAGAATGCCACGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACCCATTGGATTATGTACGCCATTGGTGGAAGTGCATCGCCCACAATCAATAGCCAAGGGAACAGATACCTTGCTCCTGATAACCGAGGTAGAAAAGAGGTGACAAAGCGTGAGGCTGCAGCAGAGACCAAATGGAAGAATTGGAATTGGAAATCAGAGGGAGATTTGATGTTGAATGGAGCGTTCTTCAGGAAGTCCGGTGCAGGAGCGTCGTTTAGCTATGCGAGGGCGTCGAGCTTGAGTGCCAAGCCATCGTCGTTGGTGAGTTCAATGACGGCAGGAGCAGGAGTCCTGAAATGCTCAAAGGGCTCCCCATGCTCTACTTAA | 2853 | 47.39 | MASLSPCRPNFMFSSFPNRVPTSNPLFHAVQFRGLSHHKPSLRGSLAVARFGFKPEFLPDPDNAEGFVRELFGKAERVLYTIADAAVSASPEDMTTAKQTEDWFTGITNYMESVLKILENGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQIETARLYKLAGINPFAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIVSRQSGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQNNDPNMKSSQAITQFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKSGGVKTPDKRFIDESIKQEQAQVQIQSSELKSVSMSTVARESEKPTAEGVKPGERFKQIKEQEARIRQQREEEKRKAEEAAKLESQTINDSDKSAAARFVVNGSLSRQDVEEVQNSMSTSTMLHRTDVDDKVSDTSEHLPSVTQEENVVETYTGVGKDAKLNGEDQGEQRVLWIIEQENQLFYEVRYRGASDRRTNTAMANPIVLLITFLLLLHMYSGSSSPAADPEQVVEEVLTSINNATKRRNLGFLSCGTGNPIDDCWRCDPDWEKNRKRLADCAIGFGKGAIGGRNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKQDMVIKLKAELIMNSFKTIDGRGRSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNMYIRDSPDHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCQDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRGRKEVTKREAAAETKWKNWNWKSEGDLMLNGAFFRKSGAGASFSYARASSLSAKPSSLVSSMTAGAGVLKCSKGSPCST | 950 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 173505 | 180512 | - | CmaCh12G000460.1 | Cma12g00046 | 304536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00046 | 950 | Coils | Coil | 401 | 432 | - | - | |
Cma12g00046 | 950 | PANTHER | OS04G0137100 PROTEIN | 563 | 945 | - | - | |
Cma12g00046 | 950 | Gene3D | - | 599 | 941 | IPR012334 | - | |
Cma12g00046 | 950 | TIGRFAM | yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family | 131 | 344 | IPR028055 | - | |
Cma12g00046 | 950 | SUPERFAMILY | Pectin lyase-like | 583 | 942 | IPR011050 | - | |
Cma12g00046 | 950 | MobiDBLite | consensus disorder prediction | 409 | 434 | - | - | |
Cma12g00046 | 950 | Pfam | Pectate lyase | 709 | 863 | IPR002022 | - | |
Cma12g00046 | 950 | SMART | amb_all | 674 | 871 | IPR002022 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 826 | 845 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 890 | 914 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 646 | 671 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 848 | 867 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 682 | 698 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 919 | 942 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 622 | 639 | IPR018082 | - | |
Cma12g00046 | 950 | PRINTS | Pollen allergen Amb family signature | 746 | 767 | IPR018082 | - | |
Cma12g00046 | 950 | PANTHER | PECTATE LYASE 18-RELATED | 563 | 945 | IPR045032 | GO:0030570 | |
Cma12g00046 | 950 | Pfam | 60Kd inner membrane protein | 131 | 345 | IPR001708 | GO:0016021|GO:0032977 | |
Cma12g00046 | 950 | MobiDBLite | consensus disorder prediction | 409 | 431 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00691 | Cma-Chr4:3498732 | Cma12g00046 | Cma-Chr12:173505 | 3.63E-09 | dispersed | |
Cma12g00046 | Cma-Chr12:173505 | Cma13g00770 | Cma-Chr13:6648875 | 0 | dispersed | |
Cma16g00545 | Cma-Chr16:2799600 | Cma12g00046 | Cma-Chr12:173505 | 2.68E-07 | dispersed | |
Cma01g00591 | Cma-Chr1:3103401 | Cma12g00046 | Cma-Chr12:173505 | 3.21E-136 | transposed | |
Cma05g00057 | Cma-Chr5:230281 | Cma12g00046 | Cma-Chr12:173505 | 0 | transposed | |
Cma12g00046 | Cma-Chr12:173505 | Cma18g00204 | Cma-Chr18:1108778 | 0 | wgd | |
Cma12g00046 | Cma-Chr12:173505 | Cma05g00056 | Cma-Chr5:225612 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00046 | K01728 | K03217 | csv:101205346 | 806.594 |