Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00046 ATGGCTTCCTTATCTCCTTGTCGCCCAAATTTTATGTTCTCTTCATTTCCGAACCGTGTTCCGACCTCAAATCCTCTATTTCATGCGGTCCAATTCCGAGGTTTATCCCACCACAAGCCCTCCCTTCGCGGTTCCCTTGCCGTTGCGAGATTCGGGTTTAAACCCGAGTTCTTGCCTGACCCAGATAACGCCGAGGGCTTTGTGAGGGAGTTGTTCGGTAAAGCTGAGCGCGTTCTGTATACGATAGCCGACGCCGCCGTGTCTGCTTCGCCGGAAGATATGACCACCGCCAAGCAAACTGAGGATTGGTTTACGGGGATTACCAATTACATGGAGAGCGTCCTTAAAATTCTTGAGAATGGACTTTCTACTCTGCATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACATTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCAATGCGTTCGTTGCAACCGCAAGTAAAGGCCGTTCAGCAACGTTATGCCGGGGATCAGGAGAGGATTCAAATTGAAACTGCTCGACTCTACAAATTAGCTGGAATAAACCCGTTTGCAGGATGCCTGCCTACGTTGGCTACAATCCCCGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAATGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCATCTCTGGCTGGTCCAACTACGATCGTTTCTCGACAAAGTGGGAGTGGTATCTCTTGGCTCTTCCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCATATCTTGTCTTGCCTGTGTTGCTGGTTGTGTCGCAGTACATCTCGGTTCAGATTATGCAATCGACGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGCCATAACGCAGTTCCTACCGTTAATGATCGGATATTTTGCACTTTCTGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTCAGGTGGTGTAAAAACCCCGGACAAACGGTTCATCGATGAAAGCATCAAACAAGAACAAGCCCAAGTCCAGATCCAATCGTCCGAGTTAAAGTCAGTTTCGATGAGCACAGTAGCCAGAGAATCAGAGAAGCCAACAGCAGAAGGGGTAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATAAGACAGCAAAGAGAAGAAGAAAAGAGGAAAGCTGAAGAGGCAGCCAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAGCTGCTAGATTTGTTGTGAATGGCAGTCTTTCTAGACAGGATGTGGAGGAAGTTCAAAACTCCATGTCCACATCTACTATGCTGCATAGAACCGATGTGGACGACAAGGTTAGCGATACAAGCGAGCATTTGCCAAGTGTAACTCAAGAAGAGAACGTAGTCGAGACGTACACCGGTGTGGGCAAGGATGCCAAACTAAATGGAGAAGATCAAGGAGAGCAGCGAGTACTCTGGATAATAGAGCAGGAAAACCAATTGTTTTACGAAGTTCGATACCGTGGAGCGTCGGATCGGAGAACGAACACAGCCATGGCAAACCCCATTGTTCTTCTCATAACCTTCCTTCTTCTTCTCCATATGTACTCTGGTTCTTCCTCTCCAGCCGCCGATCCTGAACAAGTCGTTGAAGAAGTTCTCACGAGCATCAACAATGCAACAAAAAGAAGGAACTTGGGGTTCCTCTCCTGCGGAACTGGAAACCCAATTGATGACTGTTGGAGGTGCGACCCCGATTGGGAGAAGAATCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGGGAGCCATCGGCGGCAGAAATGGAAAGTTCTACATTGTCACTGACCCATCTGACAAGGACGTGGTGAACCCAAAACCAGGAACTCTCCGCCATGCCGTAATCCAAAAAGAACCTTTATGGATCACCTTCAAACAAGACATGGTCATCAAATTAAAAGCAGAGCTGATCATGAACTCTTTCAAAACCATCGACGGTCGCGGCAGATCAGTCCACATCGCCGGAGGGCCATGCATTACAATTCAGTACGTGACGAACATTATAATCCACGGCATTAACATTCACGACTGCAAGCAAGGAGGGAATATGTACATTAGAGATTCGCCGGACCATTACGGTTGGAGGACTCTGTCGGACGGTGATGGGGTTTCGATATTTGGGGGCAGCCATATTTGGATCGACCATTGCTCGCTGTCGAATTGCCAAGATGGGTTGATTGATGCGATTCGTGGGTCTACGGCTATCACTATTTCAAACAATTATATGACCCACCATAACAAAGTTATGCTTTTGGGACATAGTGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGCGAGGGGCTGGTGCAAAGAATGCCACGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACCCATTGGATTATGTACGCCATTGGTGGAAGTGCATCGCCCACAATCAATAGCCAAGGGAACAGATACCTTGCTCCTGATAACCGAGGTAGAAAAGAGGTGACAAAGCGTGAGGCTGCAGCAGAGACCAAATGGAAGAATTGGAATTGGAAATCAGAGGGAGATTTGATGTTGAATGGAGCGTTCTTCAGGAAGTCCGGTGCAGGAGCGTCGTTTAGCTATGCGAGGGCGTCGAGCTTGAGTGCCAAGCCATCGTCGTTGGTGAGTTCAATGACGGCAGGAGCAGGAGTCCTGAAATGCTCAAAGGGCTCCCCATGCTCTACTTAA 2853 47.39 MASLSPCRPNFMFSSFPNRVPTSNPLFHAVQFRGLSHHKPSLRGSLAVARFGFKPEFLPDPDNAEGFVRELFGKAERVLYTIADAAVSASPEDMTTAKQTEDWFTGITNYMESVLKILENGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQIETARLYKLAGINPFAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIVSRQSGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQNNDPNMKSSQAITQFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKSGGVKTPDKRFIDESIKQEQAQVQIQSSELKSVSMSTVARESEKPTAEGVKPGERFKQIKEQEARIRQQREEEKRKAEEAAKLESQTINDSDKSAAARFVVNGSLSRQDVEEVQNSMSTSTMLHRTDVDDKVSDTSEHLPSVTQEENVVETYTGVGKDAKLNGEDQGEQRVLWIIEQENQLFYEVRYRGASDRRTNTAMANPIVLLITFLLLLHMYSGSSSPAADPEQVVEEVLTSINNATKRRNLGFLSCGTGNPIDDCWRCDPDWEKNRKRLADCAIGFGKGAIGGRNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKQDMVIKLKAELIMNSFKTIDGRGRSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNMYIRDSPDHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCQDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRGRKEVTKREAAAETKWKNWNWKSEGDLMLNGAFFRKSGAGASFSYARASSLSAKPSSLVSSMTAGAGVLKCSKGSPCST 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 173505 180512 - CmaCh12G000460.1 Cma12g00046 304536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00046 950 Coils Coil 401 432 - -
Cma12g00046 950 PANTHER OS04G0137100 PROTEIN 563 945 - -
Cma12g00046 950 Gene3D - 599 941 IPR012334 -
Cma12g00046 950 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 344 IPR028055 -
Cma12g00046 950 SUPERFAMILY Pectin lyase-like 583 942 IPR011050 -
Cma12g00046 950 MobiDBLite consensus disorder prediction 409 434 - -
Cma12g00046 950 Pfam Pectate lyase 709 863 IPR002022 -
Cma12g00046 950 SMART amb_all 674 871 IPR002022 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 826 845 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 890 914 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 646 671 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 848 867 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 682 698 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 919 942 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 622 639 IPR018082 -
Cma12g00046 950 PRINTS Pollen allergen Amb family signature 746 767 IPR018082 -
Cma12g00046 950 PANTHER PECTATE LYASE 18-RELATED 563 945 IPR045032 GO:0030570
Cma12g00046 950 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Cma12g00046 950 MobiDBLite consensus disorder prediction 409 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00691 Cma-Chr4:3498732 Cma12g00046 Cma-Chr12:173505 3.63E-09 dispersed
Cma12g00046 Cma-Chr12:173505 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma16g00545 Cma-Chr16:2799600 Cma12g00046 Cma-Chr12:173505 2.68E-07 dispersed
Cma01g00591 Cma-Chr1:3103401 Cma12g00046 Cma-Chr12:173505 3.21E-136 transposed
Cma05g00057 Cma-Chr5:230281 Cma12g00046 Cma-Chr12:173505 0 transposed
Cma12g00046 Cma-Chr12:173505 Cma18g00204 Cma-Chr18:1108778 0 wgd
Cma12g00046 Cma-Chr12:173505 Cma05g00056 Cma-Chr5:225612 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00046 K01728 K03217 csv:101205346 806.594