Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00050 ATGGAAAGTGGCTTCTCTTCGCCTCGAAGCGATGTGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTCAAAATCCTGGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTGACTACATGTTGCCTGGCAAGGGAGGCTCTGAGCCTGCTAAGGGAGAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGACATGGACGGTTTTAAACTCCTCGAGCATGTAGGGTTAGAAATGGACCTACCAGTTATCATGATGTCAGTCGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAGCCAATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTACTTCGAAAGAAGATTCAAGAGGGAAGAGATATTGAAGGGCATGATGTTTTTGAAGGCCTTCAAATCCTTAGAAATGGATCAGATAGGTATGATGATAGTCAGTTCCTTAGAGTAGAGGAGCTGTTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGTATGAGGAAAAAGAGTTTGGTGAGACATGTTCTACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTGCACCAGAAATTTGTTGAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGCCCTAAAAAGATTCTTGATCTCATGAATGTCCCATGGCTAACAAGGGAAAATGTAGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACAGACTGATTCGAGTTTGAAGGATGGAGATGGAAACTTCAGCGTTTGTAGCTCGTTAGGCGTGCCACAAACCGATGTCACGAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCAGAATGTGGATTCCATAGGCTGTGAAGCTGATAGGAAAAGGGTTGTTCAAGAGCAAACATCAGAGCCAAAAAGAGCTGCTGCTACTGAACTGATAAAGACACGGTGTACCCACATGAAATTCAACAACTCGTTTGCCTCTGTTGAATCTGAAGGCAAGTTAGCAGCATGTTACCCTTGGGTTGAAGCTCCACAGATGAAGCTCAAACAAGAAAGCAAGCCACATCAAGTTCAAATCAACCAACTACCATCAGTTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGACAAAGGAAGCTCCATTGAAAGTAAGGCTCCATATTCAGAGGACTGTAGCCAACCGATGGTCCATCTAAACCCACCAAAAGCTTCAACTGATTCATGTTCTGGCAAGGCTAAGAGTTTCAATGAGATCAATGACCATTTTGAGCCTATTTCAACTGCTACTGCTCCACTGGGCGTGAAAAACCAGAATGTGATCGATCTTAGCAGCATTTCAACTGATTTAGGAAGTGGGTTTCCCTTTTCAAGCTTTGACGAAGATTTGCAGGGCTATTTGTTTCAAGATGGTTGTTACCCAAAGAACCTTGAACAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGGTCCGACTCACCTTTATGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCAGTGATAGATGAAGGCCTATTCATCGCATGA 1674 42.65 MESGFSSPRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVFEGLQILRNGSDRYDDSQFLRVEELFSVRKRKDVDKYEEKEFGETCSTKKARVVWSVDLHQKFVEAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKQTDSSLKDGDGNFSVCSSLGVPQTDVTNSSFSFSGDNFLQNVDSIGCEADRKRVVQEQTSEPKRAAATELIKTRCTHMKFNNSFASVESEGKLAACYPWVEAPQMKLKQESKPHQVQINQLPSVSSISSGRSATEKDKGSSIESKAPYSEDCSQPMVHLNPPKASTDSCSGKAKSFNEINDHFEPISTATAPLGVKNQNVIDLSSISTDLGSGFPFSSFDEDLQGYLFQDGCYPKNLEQIIEFPDYGDPGIFTEGPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 187608 190601 - CmaCh12G000500.1 Cma12g00050 304540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00050 557 CDD REC_typeB_ARR-like 19 133 - -
Cma12g00050 557 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cma12g00050 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 513 - -
Cma12g00050 557 MobiDBLite consensus disorder prediction 381 406 - -
Cma12g00050 557 Gene3D - 17 179 - -
Cma12g00050 557 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Cma12g00050 557 SUPERFAMILY CheY-like 16 140 IPR011006 -
Cma12g00050 557 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cma12g00050 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 513 IPR045279 GO:0009736
Cma12g00050 557 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Cma12g00050 557 Gene3D - 194 257 - -
Cma12g00050 557 SMART REC_2 17 129 IPR001789 GO:0000160
Cma12g00050 557 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Cma12g00050 557 MobiDBLite consensus disorder prediction 379 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02080 Cma-Chr4:14160800 Cma12g00050 Cma-Chr12:187608 5.56E-35 dispersed
Cma12g00050 Cma-Chr12:187608 Cma17g00351 Cma-Chr17:1926092 4.49E-93 dispersed
Cma12g00050 Cma-Chr12:187608 Cma05g00062 Cma-Chr5:249279 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35945 PF00072 Response_reg 1.10E-24 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00050 - K14491 csv:101204370 918.687