Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00058 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAAGAAGAAGGCAGCAGAGATATGATGATCGAGGTGGCTTCTAATGGCGACCATCATATTCAACCTCATCAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCGCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGATGAGACGAGAAGCTTAATTTCACTACGAAGGGGGATGGATGGATTGTTCAATACCTCGAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGAGGCTTTGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTGAAGGAGTTCAAGAAGGCTAAACACCACGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAATGCGCAGTACAAGAGCCCTACGCCACCCAAGATTGATTCCTACATACAATTCTCAGACAAAGGAATTGAGGATAATGCTCTATCGTTTGGACCTGTCGAAGCTGGTGGCAGGCCCTCACTCAATCTTGAAAGACAGCTGGATCACGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACAGGCATCCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGGTGGGGAAGGTCAGGCATTTGGCGGGAGAGTTATAACAGTCAAGTGGGGAGACTACACAAGAAGAATCGGTGTTGATGGCACCTCAGAAGCCATCAAAGAGGCAATCAAGTCTGCATTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGTACCCCTTCTTGTGTTTGCATTGACTGTTATGATTCTTGTAAACATTATAGCACTAAGCTGCGGATTTTGGGGAAAGTAATGCATGTAAGAGCAGTTGAACTTCTAATTTCAGGGTTGGCTGTTAAAATCTGCCTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAAAAAATATTTTACACTGAAGATGAGTACCGAGAATTTTTAGCTCGCCGGGCCTGGACGTGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTACGTCCTGGTGCATTATACCGCGGTGTAAGTTGA 1251 46.12 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKGIEDNALSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGEGQAFGGRVITVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGTPSCVCIDCYDSCKHYSTKLRILGKVMHVRAVELLISGLAVKICLYDESDHLPVHTEEKIFYTEDEYREFLARRAWTCLREFDGYRNIDNMDDLRPGALYRGVS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 207686 211416 + CmaCh12G000580.1 Cma12g00058 304548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00058 416 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 330 - -
Cma12g00058 416 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 343 415 - -
Cma12g00058 416 Gene3D - 69 131 - -
Cma12g00058 416 CDD GT1 67 132 - -
Cma12g00058 416 SMART sant 65 127 IPR001005 -
Cma12g00058 416 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Cma12g00058 416 PANTHER - 5 330 - -
Cma12g00058 416 PANTHER - 343 415 - -
Cma12g00058 416 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00058 Cma-Chr12:207686 Cma13g00388 Cma-Chr13:4468626 5.29E-11 dispersed
Cma12g00058 Cma-Chr12:207686 Cma05g00068 Cma-Chr5:288554 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35946 PF13837 Myb_DNA-bind_4 1.10E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00058 - - csv:101222888 677.167