Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00066 ATGGATATTACGGAGGTTGAGGAAAGTCTATTTGCAGCACGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCTCTCTCTTCAATATATTGTAAAGCATCATCAATTTTCCCTTCATTGGAAGAAGCACGACCTCGGAGCAAATCTGGTATCCAGGCGTTATGCTCGTTGCATGTGGCACTGGAAAAAGCCAAAAATACTCTCCTACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTTGAAGTTTAAGAAGGTAAAATGTGCTCTACAGGATAGCCTTCAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCCATCAGGTTCAGGAGATTATAAAGGAACTGGACAGTACTCAATTTTTCCTAGACCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTTTATTGCTCCAACGAGGACGAACATTTAGCAACACTGTTGACAACAATGAGCTTGAGACTTTTCACCAAGCTGCTATAAAACTTGGAATAAACTCCTCTAGATCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATAGATCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCGTATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCTGATGACAATGATTCACAGGGTTCTGGACCCTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGAACTGGTGGAAATGGACATGCCTTTGAAAGGCAGCTAACAAAGCTTGGTACTTTTAACATGAAGCCAACAAATCTCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATAGAGAAGTGGTTAAGTGATGGGCATAACACCTGCCCAAAAACTCAACAGAAACTTTCTCATTTTTCATTGACGCCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGAATGGAGTTCCTGCTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTATCTGAATCAGTGTCTCTAAATTCGTCACCTGTGGACACAGTTGGTTCTTGTAAGTTGAAAGATGCTCAATTTGTTCTGGTTGAAGAAAAGGGTACAACCGAGGAGATCGAAGAAAATGTAGTGGATGACAACTCTGCTGAAGACCAGGAGTCCGTCACAAATATGCTTATTAGATACGAACAGTATTTGAAAGTTTTGAATGAAGAAGCTGACTTGAGGAAAAAGTTGGAAGTTGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGACGAGGCGAGGATTCTTATGGGAGCTAATGGATTTGTCCAGGGACTGCTACGCTACTTGGAGAGAGCTGTGCAAGAACAAGATGTTAAGGCTCAGGAAAGTGCAGCAATGGCTCTTTTCAACCTTGCAGTCAACAACGACAGGAACAAGGAAATAATGCTGGCAGAAGGTGTGATTTCATTGTTGGAAGAAATGATTATGAACCCAGATTGCCACGGATCTGCAACGGCCCTTTATCTCAATGTTTCCTGTCTGGAAGAAGCCAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTTCTTGACTCAACTCCTCCACACTGATACTGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACCGTGCCCTCCAATATTCCCAACCTGATTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGCTGCCCCTCTTGGTCGAACATGGACCGAAAAGTGCATAGCTATCTCCATAAATTTGGCTTCAGATGAATCAGGTATAGATCAAATGGCATCTACTCCAGAACTCATCAGTGGGTTGGCAGCAATATTAGACAATGGCAAATCCATTGAGCAGGAACAAGCAGTTGCTTGTCTCTTGATTCTTTGCAACGGGAGTGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATATCTGTGAATGGGACAGCAAGAGGCAAAGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGTGCAACGACAACAGGAGCCACCAACACCAACACGAACAGCGACCCCAACACCATCACCAACAGCGACCCCAACACCGTCACCGTCACCAACACCGATACGGACACCGACACCGACACGAACACCGGCACCAACACGGAAACCATCACTGAAACTGACGAAGCGATCGGAGAGTAGCGGGACATCCATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGACAATTTCAAGAAAAAAATCAATAAGAGCTTTCAGCTTTTTATGGAAAACCAAAGGCTGTTCAGTGTACCAATGA 2418 44.58 MDITEVEESLFAARDAKLHGGMCKALSSIYCKASSIFPSLEEARPRSKSGIQALCSLHVALEKAKNTLLHCTESSKLYLAITGDSVLLKFKKVKCALQDSLQRVEDIVPQSIGHQVQEIIKELDSTQFFLDPLEKQVGEDIILLLQRGRTFSNTVDNNELETFHQAAIKLGINSSRSALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGTGGNGHAFERQLTKLGTFNMKPTNLRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHFSLTPNYCVKGLIANWCEQNGVPAPDGPPDSLDLNYWRLSESVSLNSSPVDTVGSCKLKDAQFVLVEEKGTTEEIEENVVDDNSAEDQESVTNMLIRYEQYLKVLNEEADLRKKLEVVEQIRLLLKDDDEARILMGANGFVQGLLRYLERAVQEQDVKAQESAAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPDCHGSATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHTDTETLCKLDALHTLYNLSTVPSNIPNLISSGIIRGLQSLLAAPLGRTWTEKCIAISINLASDESGIDQMASTPELISGLAAILDNGKSIEQEQAVACLLILCNGSERCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFRVQRQQEPPTPTRTATPTPSPTATPTPSPSPTPIRTPTPTRTPAPTRKPSLKLTKRSESSGTSMPVAESKPLCKTISRKKSIRAFSFLWKTKGCSVYQ 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 239998 245002 - CmaCh12G000660.1 Cma12g00066 304556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00066 805 MobiDBLite consensus disorder prediction 224 247 - -
Cma12g00066 805 Gene3D - 610 707 IPR011989 -
Cma12g00066 805 Gene3D - 436 608 IPR011989 -
Cma12g00066 805 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cma12g00066 805 SMART arm_5 502 541 IPR000225 GO:0005515
Cma12g00066 805 SMART arm_5 457 501 IPR000225 GO:0005515
Cma12g00066 805 SMART arm_5 542 583 IPR000225 GO:0005515
Cma12g00066 805 SUPERFAMILY RING/U-box 279 355 - -
Cma12g00066 805 MobiDBLite consensus disorder prediction 222 253 - -
Cma12g00066 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cma12g00066 805 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cma12g00066 805 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Cma12g00066 805 MobiDBLite consensus disorder prediction 719 751 - -
Cma12g00066 805 SUPERFAMILY ARM repeat 430 692 IPR016024 -
Cma12g00066 805 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 736 - -
Cma12g00066 805 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cma12g00066 805 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cma12g00066 805 MobiDBLite consensus disorder prediction 709 776 - -
Cma12g00066 805 PANTHER U BOX DOMAIN-CONTAINING 1 736 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00066 Cma-Chr12:239998 Cma16g00618 Cma-Chr16:3193789 3.09E-85 dispersed
Cma12g00066 Cma-Chr12:239998 Cma18g00710 Cma-Chr18:6460697 0 wgd
Cma12g00066 Cma-Chr12:239998 Cma04g01823 Cma-Chr4:9191434 0 wgd
Cma12g00066 Cma-Chr12:239998 Cma05g00083 Cma-Chr5:352529 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00066 - - cpep:111798982 1470.68