Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00088 | ATGGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTTCCGCCGCCGCAGCATGACCCGGCGGGACACCAGCCACCACCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGCGATTCATTCAGTACAACATCTTTGGGAACATCTTCGAAGTTACGGCTAAGTACAAGCCTCCAATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTTCTCTCAACTCCGAGACGAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACTCTTCGCGAGATCAAGCTGCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAAGGATATCATTCCTCCGCCTCTAAGGGAAACATTTAATGATGTTTACATAGCATATGAGTTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCACTGTCAGTACTTCCTGTACCAGATTCTTCGTGGATTGAAGTACATACATTCAGCAAATGTTCTACACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGCGATTTTGGGCTTGCTCGTGTTACTTCTGAAACTGACTTTATGACGGAATATGTGGTTACTAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCTTCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTGCATCAGTTACGCTTGCTTTTGGAGCTGATAGGCACTCCATCAGAGGCTGATCTTGGTTTCTTGAACGAGAACGCTAAAAGATACATACGACAACTTCCTCACTACCATCGGCAGTCATTCACTGAAAAATTTCCACATGTTCATCCTTCAGCCATTGATCTGGTGGAGAAGATGCTGGCATTTGATCCTGGACAGAGAATTACCGTTGAAGATGCTCTAGCTCATCCTTATTTGACTTCATTGCACGACATTAGTGACGAGCCTGTGTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCACGCTCTCACTGAGGAACAAATGAAAGAGCTGATCTACCGAGAGGCACTTGCATTTAACCCGGAGTATCATCAACAATAA | 1200 | 45.67 | MDGGASQPDDTVMSEAASVPPPQHDPAGHQPPPMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSSLNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIKDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPSAIDLVEKMLAFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYHQQ | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 338930 | 345210 | + | CmaCh12G000880.1 | Cma12g00088 | 304578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00088 | 399 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cma12g00088 | 399 | SMART | serkin_6 | 66 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00088 | 399 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g00088 | 399 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 31 | 397 | - | - | |
Cma12g00088 | 399 | SUPERFAMILY | Protein kinase-like (PK-like) | 71 | 359 | IPR011009 | - | |
Cma12g00088 | 399 | ProSitePatterns | MAP kinase signature. | 101 | 204 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cma12g00088 | 399 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 31 | 397 | - | - | |
Cma12g00088 | 399 | ProSiteProfiles | Protein kinase domain profile. | 66 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00088 | 399 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 388 | - | - | |
Cma12g00088 | 399 | ProSitePatterns | Protein kinases ATP-binding region signature. | 72 | 96 | IPR017441 | GO:0005524 | |
Cma12g00088 | 399 | Pfam | Protein kinase domain | 71 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00088 | 399 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 378 | - | - | |
Cma12g00088 | 399 | CDD | STKc_TEY_MAPK | 59 | 394 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00088 | Cma-Chr12:338930 | Cma15g01248 | Cma-Chr15:7927658 | 0 | dispersed | |
Cma12g00088 | Cma-Chr12:338930 | Cma05g00431 | Cma-Chr5:1956044 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68938 | PF00069 | Pkinase | 7.90E-73 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00088 | K14512 | - | csv:101204301 | 798.505 |