Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00088 ATGGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTTCCGCCGCCGCAGCATGACCCGGCGGGACACCAGCCACCACCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGCGATTCATTCAGTACAACATCTTTGGGAACATCTTCGAAGTTACGGCTAAGTACAAGCCTCCAATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTTCTCTCAACTCCGAGACGAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACTCTTCGCGAGATCAAGCTGCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAAGGATATCATTCCTCCGCCTCTAAGGGAAACATTTAATGATGTTTACATAGCATATGAGTTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCACTGTCAGTACTTCCTGTACCAGATTCTTCGTGGATTGAAGTACATACATTCAGCAAATGTTCTACACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGCGATTTTGGGCTTGCTCGTGTTACTTCTGAAACTGACTTTATGACGGAATATGTGGTTACTAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCTTCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTGCATCAGTTACGCTTGCTTTTGGAGCTGATAGGCACTCCATCAGAGGCTGATCTTGGTTTCTTGAACGAGAACGCTAAAAGATACATACGACAACTTCCTCACTACCATCGGCAGTCATTCACTGAAAAATTTCCACATGTTCATCCTTCAGCCATTGATCTGGTGGAGAAGATGCTGGCATTTGATCCTGGACAGAGAATTACCGTTGAAGATGCTCTAGCTCATCCTTATTTGACTTCATTGCACGACATTAGTGACGAGCCTGTGTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCACGCTCTCACTGAGGAACAAATGAAAGAGCTGATCTACCGAGAGGCACTTGCATTTAACCCGGAGTATCATCAACAATAA 1200 45.67 MDGGASQPDDTVMSEAASVPPPQHDPAGHQPPPMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSSLNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIKDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPSAIDLVEKMLAFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYHQQ 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 338930 345210 + CmaCh12G000880.1 Cma12g00088 304578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00088 399 MobiDBLite consensus disorder prediction 1 37 - -
Cma12g00088 399 SMART serkin_6 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00088 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Cma12g00088 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 397 - -
Cma12g00088 399 SUPERFAMILY Protein kinase-like (PK-like) 71 359 IPR011009 -
Cma12g00088 399 ProSitePatterns MAP kinase signature. 101 204 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma12g00088 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 397 - -
Cma12g00088 399 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00088 399 Gene3D Phosphorylase Kinase; domain 1 49 388 - -
Cma12g00088 399 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Cma12g00088 399 Pfam Protein kinase domain 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00088 399 Gene3D Transferase(Phosphotransferase) domain 1 150 378 - -
Cma12g00088 399 CDD STKc_TEY_MAPK 59 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00088 Cma-Chr12:338930 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma12g00088 Cma-Chr12:338930 Cma05g00431 Cma-Chr5:1956044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68938 PF00069 Pkinase 7.90E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00088 K14512 - csv:101204301 798.505