Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00101 ATGTCTTCGTCCGAGAAGGAGAGAGAGACACAGGTCTACTTGGCCAAGCTCGCCGAGCAGGCCGAGCGCTATGACGAAATGGTTGAGTGTATGAAGAATATTGCAAAGCTTGATCTCGAACTAACTGTGGAGGAGAGGAACCTTCTCTCTGTCGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCCAAGGGAAATGAAGGCATTGTAAAATTGATAAAGGGTTACCGCCAGAAAGTAGAGGAGGAACTTTCAAAGATTTGTGGTGATATTCTCTCTATCATAGACAAGCATCTAATCCCCCATTCGTCCTCTGCAGAAGCCACGGTCTTCTACTATAAGATGAAAGGTGACTACTTTCGCTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAAGCTGCTGATCAGTCATTGAAGGGATATGAGGCTGCCTCAAGCACTGCAAATACTGAACTCCCATCAACCCATCCCATCCGGCTTGGCCTTGCTCTCAATTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTAGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTAATCATGCAACTGTTGAGAGACAACCTCACCCTCTGGACCTCAGATTTGCCTGAAGACGGCGGTGAAGAGAACGTCAAAGCTGAGGATTCCAAGCCTGTTGAACCTGAGCCCCAGCAAGCGAAATGA 795 46.04 MSSSEKERETQVYLAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEGIVKLIKGYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKMKGDYFRYLAEFKTDQDRKEAADQSLKGYEAASSTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKAEDSKPVEPEPQQAK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 400660 403713 - CmaCh12G001010.1 Cma12g00101 304591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00101 264 PANTHER 14-3-3 PROTEIN 4 257 IPR000308 -
Cma12g00101 264 PIRSF 14-3-3 2 249 IPR000308 -
Cma12g00101 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Cma12g00101 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Cma12g00101 264 MobiDBLite consensus disorder prediction 242 258 - -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Cma12g00101 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Cma12g00101 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Cma12g00101 264 Coils Coil 196 216 - -
Cma12g00101 264 PANTHER BNAC03G57490D PROTEIN 4 257 - -
Cma12g00101 264 MobiDBLite consensus disorder prediction 237 264 - -
Cma12g00101 264 Coils Coil 14 34 - -
Cma12g00101 264 SMART 1433_4 8 249 IPR023410 -
Cma12g00101 264 Gene3D - 1 250 IPR036815 -
Cma12g00101 264 Pfam 14-3-3 protein 14 236 IPR023410 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01607 Cma12g00101 CCT
Cma01g01607 Cma12g00101 ECH
Cma05g00501 Cma12g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01888 Cma-Chr11:12509581 Cma12g00101 Cma-Chr12:400660 1.63E-146 dispersed
Cma12g00101 Cma-Chr12:400660 Cma19g01027 Cma-Chr19:8778030 3.03E-134 dispersed
Cma04g01697 Cma-Chr4:8531498 Cma12g00101 Cma-Chr12:400660 8.84E-178 transposed
Cma12g00101 Cma-Chr12:400660 Cma05g00448 Cma-Chr5:2058099 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00101 - K06630 csv:101221858 501.13