Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00103 ATGGGCCGTGGAGTCAGCAGTGGTGGTGGTCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCTGGTGCCCCCAAAGGTGGCCAAGCACCAGCACCAGCACCAGCACCAGCACCAGTACCAGCACCACGTTCTAATGAAGGAAAGCATGTATCCAAACCAGCAGCTTTCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCGGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGTGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGAATTAACCCTTTTGAAGGATATGAACAATATTGGGGTTAAGAAGAGAGGTCATGGGAATCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCAGAGGTTTTGGAGCTTGAGAAGGCTACTATAATGAGGCATTGTTCTTTACCTTCAAGAGATATGCGACTTTTGGATCCGCTCTTCCTTTGCCCGTCCACAATTCTCGGGAGGGAGAAGGCGATCGTTGTCAGTCTCGAGCAAATTCGGTGTATAATCACAGCTGATGAGGTGATTCTGATGAACTCCTTAGATGGATGTGCTGCTCAGTACAAGGCAGAGCTGTGCAAGCGTCTCCATGCAAGTAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCACTGGAACTTACTTGTTCATTTCTTGACACTCAGGTACGTGATGAAGTCGAGCATCTGATGGACGATGATGGGGATATGGCAGAGATGTTTCTGACAGAAAAGAAACAAAGATTGGAGGCGAACATCCGAAGTAACTTGTATCTCGAAACTAGTTTCTTCGGGAAACCAAAATCTGCTCCTGTTTCACCAGTGGGTTCTACCAATGGATCTTATAAATTACAAAGGGCGTTTAGCAGTATTGTAAACTCGAGCAGCTTGATGAGTTCATCAAACGGTGGTGATAACGTCGAACAATTGGAGATGCTGCTCGAGGCGTACTTCGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTCCAGGTACAAGAAAATCTTCCCACTGTAATTGAGCTGCAGTATAACCTGTCCATTGTCGACGACAGAGCGGCTCCTTCAAATTCGAATTCAGTTGGAGCGGATGATGAGAAACAGCCATTAGTGAAGAGCTTTAAATAA 1341 45.86 MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPVPAPRSNEGKHVSKPAAFKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAELTLLKDMNNIGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITADEVILMNSLDGCAAQYKAELCKRLHASKDQSDDLPFEFRALELALELTCSFLDTQVRDEVEHLMDDDGDMAEMFLTEKKQRLEANIRSNLYLETSFFGKPKSAPVSPVGSTNGSYKLQRAFSSIVNSSSLMSSSNGGDNVEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQVQENLPTVIELQYNLSIVDDRAAPSNSNSVGADDEKQPLVKSFK 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 404844 419229 - CmaCh12G001030.1 Cma12g00103 304593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00103 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 267 403 IPR039204 -
Cma12g00103 446 MobiDBLite consensus disorder prediction 1 19 - -
Cma12g00103 446 CDD Mrs2_Mfm1p-like 149 404 IPR039204 -
Cma12g00103 446 Gene3D Magnesium transport protein CorA, transmembrane region 223 267 - -
Cma12g00103 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 134 270 IPR039204 -
Cma12g00103 446 MobiDBLite consensus disorder prediction 69 104 - -
Cma12g00103 446 MobiDBLite consensus disorder prediction 1 113 - -
Cma12g00103 446 PANTHER MAGNESIUM TRANSPORTER MRS2-5 267 403 - -
Cma12g00103 446 PANTHER MAGNESIUM TRANSPORTER MRS2-5 134 270 - -
Cma12g00103 446 MobiDBLite consensus disorder prediction 426 446 - -
Cma12g00103 446 Gene3D Magnesium transport protein CorA, transmembrane region 268 398 - -
Cma12g00103 446 Gene3D - 134 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02805 Cma-Chr4:18784430 Cma12g00103 Cma-Chr12:404844 1.80E-23 dispersed
Cma12g00103 Cma-Chr12:404844 Cma01g00188 Cma-Chr1:840566 4.22E-87 dispersed
Cma12g00103 Cma-Chr12:404844 Cma05g00449 Cma-Chr5:2062992 8.55E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00103 K16075 - csv:101220835 427.943