Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00105 ATGCTGACTTCGTTCATGGATGCCACGAAATATTCTCCTGATAAGGTGGACAGGTGCTTGTTTGATGCTTGTTTGGGGGAGGGATTTTCTCTCTTAGAACATTGTTCGGCTACACATCTACTTGCCTGTAGCCGTCTCCTTCTCTTCTACTTGGCGCCAAACCAGACTCAACCAACCATGTCATCACCAAACGTCCAAACCTTTCTCCATTTCCCTTCTTCCATTTCCCAAAGCTTCCCAGCCCTTCTCTCAGCGCTGCTTCTTCTCTCCATTTTCGCCTTCTTCCTTCACCCCGGCGGCCTCGCTTGGGCTCTTTCCAAGTCCAAAACCGCCGCCTCTGCCGCCATCCCGGGCCCCTCCGGCTTCCCATTCATCGGTCTCCTCCATGTCTTCACTCTCTCAAAAACCCCTCACAAAGCCCTCTCTGCACTTTCCAATAAATTCAAAGCACACCCTTTAATGGCCTTCTCTATTGGCCTAACCAACTTCGTCATTTCAAGCCACCCGGATTTTGCCAAGGAAATTCTCAATAGCGCTTCCTTTGCTGATAGGCCTGTGAAGGAATCTGCTTATGAACTTCTCTTCCACAGAGCTATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCAGCTACTTACATGTTTAGTCCTAAGAGAATAGGTGCATTTGAAGGGTTTAGAAGGGAACTTGGAGGGAAAATGATAAGGGAAGTTGAGAAATCCATGGCTTTGAATGGGGAAGTTAGAGTTAAGGAGATTCTTCATTTTGGGTCTTTGAATAATGTTATGATGACTGTTTTTGGTAAGTGTTATGAGTTTAGTGGATTGGTGAAGGATGGGGTTGAGCTTGAGGAACTGGTGAGTGAAGGGTATGAATTGCTTGGGATTTTCAATTGGAGTGATCATTTTCCCTTTCTGGGTTGGCTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAAGTGAATGTTTTTGTGGGAAAAATCATTGACGAACATAGAATTAGGAGGAAAGTTAAGCTACATCACGAACACGAAGAACACGAACAAGAACAAGAACATAATCGAGACTTTGTTGATGTCCTACTTGATTTAGAGAAAGATGACAAGCTCTCAGATTCCGACATGATTGCTGTTCTTTGGGAAATGATTTTTCGAGGAACAGACACAGTGGCAATACTGTTGGAATGGATCATAGCACGAATGGTTCTACACCCAGAAATCCAGACCAAAGCTCAAAACGAAATCGATTCAGTAATTGGCAAAAGATCCAAACCCATTTCAGATTCTGATATCCCAAATCTTCCATTTCTTCAATCCATTGTCAAAGAGTGTTTAAGATTGCACCCACCAGGGCCACTTCTATCATGGGCTAGGCTCGCAGTCAACGACGTGGACGTCGGCGGGAGGCTGATTCCTGCCGGGACGACGGCGATGGTGAACATGTGGGCAATAACACACAACGAAAAGGTTTGGTCAGAGGCTGAGAAGTTCGAGCCAAATAGGTTCATGGAAGAGGAAGTGAGTGTTATGGGAAGCGATTTGAGATTGGCTCCATTTGGTGCAGGGAGAAGAGTATGCCCTGGAAAAGCCATGGGATTGGCCACTGTTCATCTCTGGTTGGCTCAGTTTCTTCAAGCTTTCAAATGGGTTCCTTCTGAAAAGGGCATTAATGGCGTTGACTTGTCAGAATGTCTCAAACTCTCTTTGGAAATGCAAACTCCATTGATTTGCAGAGCTATCCCTAGGGTTTGCTAA 1782 45.17 MLTSFMDATKYSPDKVDRCLFDACLGEGFSLLEHCSATHLLACSRLLLFYLAPNQTQPTMSSPNVQTFLHFPSSISQSFPALLSALLLLSIFAFFLHPGGLAWALSKSKTAASAAIPGPSGFPFIGLLHVFTLSKTPHKALSALSNKFKAHPLMAFSIGLTNFVISSHPDFAKEILNSASFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATYMFSPKRIGAFEGFRRELGGKMIREVEKSMALNGEVRVKEILHFGSLNNVMMTVFGKCYEFSGLVKDGVELEELVSEGYELLGIFNWSDHFPFLGWLDLQGVRKRCRCLASKVNVFVGKIIDEHRIRRKVKLHHEHEEHEQEQEHNRDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWIIARMVLHPEIQTKAQNEIDSVIGKRSKPISDSDIPNLPFLQSIVKECLRLHPPGPLLSWARLAVNDVDVGGRLIPAGTTAMVNMWAITHNEKVWSEAEKFEPNRFMEEEVSVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQFLQAFKWVPSEKGINGVDLSECLKLSLEMQTPLICRAIPRVC 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 425207 429566 - CmaCh12G001050.1 Cma12g00105 304595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00105 593 Pfam Cytochrome P450 117 563 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 SUPERFAMILY Cytochrome P450 116 591 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 528 537 IPR017972 GO:0005506|GO:0016705
Cma12g00105 593 PANTHER CYTOCHROME P450 78A7-RELATED 67 591 - -
Cma12g00105 593 PANTHER CYTOCHROME P450 78A5 67 591 - -
Cma12g00105 593 Gene3D Cytochrome P450 103 585 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 262 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 383 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 403 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 447 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 489 513 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 525 535 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS E-class P450 group I signature 535 558 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS P450 superfamily signature 394 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS P450 superfamily signature 526 535 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00105 593 PRINTS P450 superfamily signature 535 546 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00105 Cma-Chr12:425207 Cma13g01064 Cma-Chr13:8065753 0 dispersed
Cma12g00105 Cma-Chr12:425207 Cma05g00453 Cma-Chr5:2082462 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00105 K20619 - csv:101221468 840.106