Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00107 ATGGGAAGAGGGAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACAAAACGAAGAAATGGTCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCTCTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCACCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGCTGAAGTGGAAGGTCTGCAGCATTCACAGAGGCAAATTCTTGGAGAAGAATTGGAAGATTTGGAGACAAAGGAATTGGACCAACTCGAAATTCAATTGGAAATGTCTCTGAAGCAAATCAGGTTCACTAAGAACCAATCGGTGTATGAAAAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGCGGACAACCTGAGGCCTTTCTTCAAAGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGAAATGAGTTGCCTTTGCATTGGATGATGCTTTGA 720 42.78 MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKAEVEGLQHSQRQILGEELEDLETKELDQLEIQLEMSLKQIRFTKNQSVYEKLSELKKKEELLLETNQALRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQSNNIALENSYNPAEVSNQENAINSEPEGNELPLHWMML 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 438228 440474 + CmaCh12G001070.1 Cma12g00107 304597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00107 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cma12g00107 239 PANTHER - 1 217 - -
Cma12g00107 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 Coils Coil 124 144 - -
Cma12g00107 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00107 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 - -
Cma12g00107 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cma12g00107 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma12g00107 239 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cma12g00107 239 Coils Coil 150 173 - -
Cma12g00107 239 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00107 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00107 Cma-Chr12:438228 Cma14g01149 Cma-Chr14:9050926 8.08E-79 dispersed
Cma20g01055 Cma-Chr20:7916265 Cma12g00107 Cma-Chr12:438228 7.08E-10 dispersed
Cma12g00107 Cma-Chr12:438228 Cma01g00423 Cma-Chr1:2127490 3.70E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35948 PF01486 K-box 5.90E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00107 K09264 - csv:101220998 353.984