Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00108 ATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAACGATATTCGTATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCCCGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTTAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGTTCGATCGAGGAAAGAACGAGCAATTCAGGAACAAAACGCTCTCCTAGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGCAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTTCCATCAGCCCCTCACCCGTCTCTAAACATCGGGCTTGCGAGTTTTGATGGTCACCTATGA 630 43.02 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKERAIQEQNALLAKQIKEKEKSAAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 442992 447189 + CmaCh12G001080.1 Cma12g00108 304598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00108 209 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cma12g00108 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cma12g00108 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 ProSiteProfiles K-box domain profile. 90 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00108 209 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 187 - -
Cma12g00108 209 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cma12g00108 209 Coils Coil 127 147 - -
Cma12g00108 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Cma12g00108 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 Pfam K-box region 85 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00108 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma12g00108 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00108 Cma-Chr12:442992 Cma18g00020 Cma-Chr18:80281 6.11E-48 dispersed
Cma12g00108 Cma-Chr12:442992 Cma13g01058 Cma-Chr13:8032668 4.53E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35949 PF01486 K-box 4.30E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00108 K09264 - csv:101219414 357.836