Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00116 ATGAGAACGGCGAAAAGCATCCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTGCTTCTACTTACAACGCAAACAGTAGCATCGGAAACAGCAAAGATGGGAAGAACAATGATAAGGCTAATGCCATAAGGTCGAAGCACTCAGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGTATCGTTCTTATTGGAGGTGATTGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTGATACCATGGGTAAAGACCAAAGCTCTTCCTTTATTATATTTGGGAGTTATCATTCACTAA 420 42.86 MRTAKSIQEDEEYEEDELVAKREGPASTYNANSSIGNSKDGKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTVSFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWVKTKALPLLYLGVIIH 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 481695 482532 - CmaCh12G001160.1 Cma12g00116 304606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00116 139 MobiDBLite consensus disorder prediction 1 62 - -
Cma12g00116 139 Gene3D - 46 119 IPR036638 GO:0046983
Cma12g00116 139 CDD bHLH_AtBIM_like 48 123 - -
Cma12g00116 139 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Cma12g00116 139 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Cma12g00116 139 MobiDBLite consensus disorder prediction 26 43 - -
Cma12g00116 139 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 120 IPR036638 GO:0046983
Cma12g00116 139 PANTHER TRANSCRIPTION FACTOR BIM2 1 123 - -
Cma12g00116 139 MobiDBLite consensus disorder prediction 44 62 - -
Cma12g00116 139 SMART finulus 55 105 IPR011598 GO:0046983
Cma12g00116 139 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 123 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00116 Cma-Chr12:481695 Cma14g01144 Cma-Chr14:8960057 3.84E-39 dispersed
Cma12g00116 Cma-Chr12:481695 Cma05g00460 Cma-Chr5:2124719 2.24E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35950 PF00010 HLH 6.80E-14 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00116 - - cpep:111786766 261.151