Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00116 | ATGAGAACGGCGAAAAGCATCCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTGCTTCTACTTACAACGCAAACAGTAGCATCGGAAACAGCAAAGATGGGAAGAACAATGATAAGGCTAATGCCATAAGGTCGAAGCACTCAGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGTATCGTTCTTATTGGAGGTGATTGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTGATACCATGGGTAAAGACCAAAGCTCTTCCTTTATTATATTTGGGAGTTATCATTCACTAA | 420 | 42.86 | MRTAKSIQEDEEYEEDELVAKREGPASTYNANSSIGNSKDGKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTVSFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWVKTKALPLLYLGVIIH | 139 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 481695 | 482532 | - | CmaCh12G001160.1 | Cma12g00116 | 304606 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00116 | 139 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cma12g00116 | 139 | Gene3D | - | 46 | 119 | IPR036638 | GO:0046983 | |
Cma12g00116 | 139 | CDD | bHLH_AtBIM_like | 48 | 123 | - | - | |
Cma12g00116 | 139 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983 | |
Cma12g00116 | 139 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983 | |
Cma12g00116 | 139 | MobiDBLite | consensus disorder prediction | 26 | 43 | - | - | |
Cma12g00116 | 139 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 120 | IPR036638 | GO:0046983 | |
Cma12g00116 | 139 | PANTHER | TRANSCRIPTION FACTOR BIM2 | 1 | 123 | - | - | |
Cma12g00116 | 139 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Cma12g00116 | 139 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983 | |
Cma12g00116 | 139 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 1 | 123 | IPR044295 | GO:0003700|GO:0006351|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00116 | Cma-Chr12:481695 | Cma14g01144 | Cma-Chr14:8960057 | 3.84E-39 | dispersed | |
Cma12g00116 | Cma-Chr12:481695 | Cma05g00460 | Cma-Chr5:2124719 | 2.24E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35950 | PF00010 | HLH | 6.80E-14 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00116 | - | - | cpep:111786766 | 261.151 |