Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00124 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGTCGGAGGTCTAACGATCGGGCTCTAACACTTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGTTAGCTCAAAATCGTGAGGCTGCGAGGAAAAGTCGATTGAGGAAGAAAGCTTATGTTCAACAACTAGAAAGCAGTCGTTTAAAGCTGACACAACTCGAGCAGGAGCTTCAACGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGAAATGGAGCCATGGCATTCGACGTAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAAATGAACGAATTGAGATCCGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGACGGGATCTTGGTTCATTACGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCGAAGGCTGACGTTTTCCATTTGTTATCAGGCATGTGGAAAACACCTGCCGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAGTCATCACAGCAAGCAGAAGATGCTTTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCCGAGACGTTGTCGAGTGGATCTCTCGGCTCCTCCAGTTCGTCGGGGAACGTTGCAAACTACATGGGTCAGATGGCTATGGCGATGGGTAAACTCGGGACGCTCGAGGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCGTACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTGTGGCTTGCTCGGCCCCGAGAGTAA 1002 48.9 MATEGSPRTDISTDGDTDEKSRRSNDRALTLVMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQMNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAVHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 511435 515644 - CmaCh12G001240.1 Cma12g00124 304614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00124 333 PANTHER TRANSCRIPTION FACTOR TGA9 4 333 - -
Cma12g00124 333 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 333 - -
Cma12g00124 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Cma12g00124 333 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Cma12g00124 333 Coils Coil 67 94 - -
Cma12g00124 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Cma12g00124 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Cma12g00124 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Cma12g00124 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Cma12g00124 333 Gene3D - 47 99 - -
Cma12g00124 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351|GO:0043565
Cma12g00124 333 Coils Coil 124 144 - -
Cma12g00124 333 MobiDBLite consensus disorder prediction 11 26 - -
Cma12g00124 333 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00087 Cma-Chr6:480546 Cma12g00124 Cma-Chr12:511435 1.19E-129 dispersed
Cma12g00124 Cma-Chr12:511435 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma12g00124 Cma-Chr12:511435 Cma04g01321 Cma-Chr4:6717277 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35951 PF14144 DOG1 6.90E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00124 K14431 - csv:101213210 583.178