Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00124 | ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGTCGGAGGTCTAACGATCGGGCTCTAACACTTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGTTAGCTCAAAATCGTGAGGCTGCGAGGAAAAGTCGATTGAGGAAGAAAGCTTATGTTCAACAACTAGAAAGCAGTCGTTTAAAGCTGACACAACTCGAGCAGGAGCTTCAACGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGAAATGGAGCCATGGCATTCGACGTAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAAATGAACGAATTGAGATCCGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGACGGGATCTTGGTTCATTACGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCGAAGGCTGACGTTTTCCATTTGTTATCAGGCATGTGGAAAACACCTGCCGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAGTCATCACAGCAAGCAGAAGATGCTTTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCCGAGACGTTGTCGAGTGGATCTCTCGGCTCCTCCAGTTCGTCGGGGAACGTTGCAAACTACATGGGTCAGATGGCTATGGCGATGGGTAAACTCGGGACGCTCGAGGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCGTACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTGTGGCTTGCTCGGCCCCGAGAGTAA | 1002 | 48.9 | MATEGSPRTDISTDGDTDEKSRRSNDRALTLVMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQMNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAVHDYFSRLRALSSLWLARPRE | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 511435 | 515644 | - | CmaCh12G001240.1 | Cma12g00124 | 304614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00124 | 333 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 4 | 333 | - | - | |
Cma12g00124 | 333 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 4 | 333 | - | - | |
Cma12g00124 | 333 | Pfam | bZIP transcription factor | 48 | 88 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00124 | 333 | SMART | brlzneu | 44 | 107 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00124 | 333 | Coils | Coil | 67 | 94 | - | - | |
Cma12g00124 | 333 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 46 | 90 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00124 | 333 | SUPERFAMILY | Leucine zipper domain | 48 | 91 | IPR046347 | GO:0003700|GO:0006355 | |
Cma12g00124 | 333 | Pfam | Seed dormancy control | 130 | 205 | IPR025422 | GO:0006351|GO:0043565 | |
Cma12g00124 | 333 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 51 | 66 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00124 | 333 | Gene3D | - | 47 | 99 | - | - | |
Cma12g00124 | 333 | ProSiteProfiles | DOG1 domain profile. | 113 | 330 | IPR025422 | GO:0006351|GO:0043565 | |
Cma12g00124 | 333 | Coils | Coil | 124 | 144 | - | - | |
Cma12g00124 | 333 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Cma12g00124 | 333 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00087 | Cma-Chr6:480546 | Cma12g00124 | Cma-Chr12:511435 | 1.19E-129 | dispersed | |
Cma12g00124 | Cma-Chr12:511435 | Cma14g00509 | Cma-Chr14:2477165 | 0 | dispersed | |
Cma12g00124 | Cma-Chr12:511435 | Cma04g01321 | Cma-Chr4:6717277 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35951 | PF14144 | DOG1 | 6.90E-32 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00124 | K14431 | - | csv:101213210 | 583.178 |