Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00128 ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGAACTCCAGAAGTTTGCAGGGAACGACCCCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTAAAATCTCTGAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGATTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAATCTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGTATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGATTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTCTTTGGCTCTACTGATGGTATAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCCGATTCGAACATCGCGAAGATTTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTATTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGAATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATCTACTTTATCTTAGTGTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGGGCATTTTTGATGAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAA 1143 43.31 MTNFLFKVPLRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFVMQYLSEDPHLLEMYQKKMAVL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 527480 528622 - CmaCh12G001280.1 Cma12g00128 304618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00128 380 Gene3D Transcription termination factor 3, mitochondrial 175 371 IPR038538 -
Cma12g00128 380 Gene3D Transcription termination factor 3, mitochondrial 59 174 IPR038538 -
Cma12g00128 380 PANTHER - 8 377 - -
Cma12g00128 380 PANTHER CGI-12 PROTEIN-RELATED 8 377 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 SMART mt_12 29 57 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 Pfam mTERF 185 355 IPR003690 GO:0003690|GO:0006355
Cma12g00128 380 Pfam mTERF 81 233 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00128 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101219073 514.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01013 Cma-Chr3:7072273 Cma12g00128 Cma-Chr12:527480 2.91E-18 dispersed
Cma12g00128 Cma-Chr12:527480 Cma17g01117 Cma-Chr17:7825207 2.41E-61 dispersed
Cma12g00128 Cma-Chr12:527480 Cma12g00129 Cma-Chr12:529466 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g391 . . . . . . . . . . . . . . . . Cpe07g00108 . . . . . . . . . . . . . . Cone4ag1349 Cone7ag1582 . . . . . . . . . . . . . . . . . Cma12g00128 . . . . . . . . . . . . . . . . . . . Lsi08g00930 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014402 0 0 0 0 0 0 0 0 0 2 0 0 2 1 2 2 0 3 3 0 2 0 0 1 1 1 1 0 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35952 PF02536 mTERF 4.80E-15 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00128 Cma_Chr12 FPKM 7.173666 7.47167 9.509266 8.540486 13.890863 8.446709 15.009003 9.567661 10.67371 11.20507