Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00135 ATGGATGTACACGGACAGCAGAAAGCGCAAGAGGCCCTAGATGTTGAAATCAAATCATTTTTTGATTCAGCTCCCCCTTTGAGGAATATTGAGAACGTCAGTGAAGATTTGAAAAAATTTATTGAAATGAATTCATCTGGAACTAGAAGTGCCAGGAAAGTTGTTTGTGTGACATCTGGGGGCACCACAGTTCCTTTAGAGCAAAGATGTGTTCGTTATATAGACAACTTCAGCTCAGGTCACAGAGGTGCAGCATCCACAGAGTACTTTTTGAAGGCTGGATATTTGGTTATCTTCTTATACCGGAAGGGAACCTGTCAACCATATTGCAGTTTGCTTCCTGATTATCCATTTCTGGAGTGTTTCGAGTTCACCCATGAGTCAGGCATCCAAGTGCGCCAGCCTTATTCAGAAGCCGTGAAGTGGGCAATCAGTGAGCATCATGCTGCAGTAGCAGATGGCACACTTCTGAAACTTCCTTTCACAACCATTTTTGAGTATCTTCAGATATTGCACATGGTTGCAACATCATTGAGGAGTCTTGGGCCCAATGCACTCTTTTATCTTGCTGCAGCTGTGTCTGACTTTTATGTTCCATGGGAGAGCATGGCAGAGCACAAGATTCAGTCAGGATCAGGCCCTTTAGACATGCGACTTGTTCAGGTGCCAAAGATGCTATCAGTGCTGAGGAGTGAGTGGGCTCCAACGGCGTACTGTATCTCCTTCAAGCTAGAGACTGATGTAAAAATCCTCTTGGAAAAAGCTAATGCAGCTCTGAAAAAGTACAAGATGCATATGGTCATTGCAAATGAACTTTTGACCCGCAAAGAGGAGGTAACACTTGTTACTGATAATGAAAATATTCATGTTCGGCGTGACCCGAAACAGGTTGGCGACGAAGTAGAGAAACATATTATCGAACATATTGTTGAGAAGCATTCTACTTATGTCGATAATTTGGACCAGAAAGTCTCGAGGGACACGGGATCATAG 993 43.5 MDVHGQQKAQEALDVEIKSFFDSAPPLRNIENVSEDLKKFIEMNSSGTRSARKVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYLVIFLYRKGTCQPYCSLLPDYPFLECFEFTHESGIQVRQPYSEAVKWAISEHHAAVADGTLLKLPFTTIFEYLQILHMVATSLRSLGPNALFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLRSEWAPTAYCISFKLETDVKILLEKANAALKKYKMHMVIANELLTRKEEVTLVTDNENIHVRRDPKQVGDEVEKHIIEHIVEKHSTYVDNLDQKVSRDTGS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 582077 586281 - CmaCh12G001350.1 Cma12g00135 304625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00135 330 PANTHER PHOSPHOPANTOTHENATE--CYSTEINE LIGASE 2 5 321 - -
Cma12g00135 330 Gene3D - 33 320 IPR035929 -
Cma12g00135 330 Pfam DNA / pantothenate metabolism flavoprotein 52 103 IPR007085 -
Cma12g00135 330 Pfam DNA / pantothenate metabolism flavoprotein 165 277 IPR007085 -
Cma12g00135 330 PANTHER CORNICHON-RELATED 5 321 - -
Cma12g00135 330 SUPERFAMILY CoaB-like 41 316 IPR035929 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00135 K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP) [EC:6.3.2.51] - csv:101214416 565.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g344 . . . . . . . . . Cmo12g00109 . . . . . . Cpe07g00115 Bhi04g00720 . . . . . . Cla08g01082 Cam08g1533 Cec08g1109 Cco08g1236 Clacu08g1238 . Cre08g1019 . . . . . . . Cme03g01492 . . . Bda01g01398 . . . . . . . Cma12g00135 . . . . . . . . . . . . . . . . . . . Lsi08g00938 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004404 1 4 1 1 1 3 1 3 1 1 3 3 1 1 1 1 3 2 1 1 1 1 0 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00135 Cma_Chr12 FPKM 4.031783 3.703768 7.480327 6.273685 10.359682 11.551297 11.495944 7.066157 6.802239 7.383947