Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00139 ATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCGCTTCTACTTCCTCCAGAGCCATAGAATCCACGTCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTCTTACCCATTATTAAGTTTCTCTCCAGCCTCCCATTCTTTTCCGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTAAATACAGAAGAGGATGATGGAAAATATGAGAATAAGGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGTGAAGCGTTTCTTGATGGAAATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAAATTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGGATACGTCGGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAAACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAGTCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGTTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCTGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCTCGAGAGGAGTCGCAGGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTTCTCGGAGAACGTCTTCTAAGACCAGCAAGAGTAAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCTGAGAAACCGACCGATCAACCTGCAACTGCTACTGCTAGAGTAGACGAACACTAA 948 42.41 MAALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPVRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTDQPATATARVDEH 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 606135 609212 - CmaCh12G001390.1 Cma12g00139 304629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00139 315 Coils Coil 112 146 - -
Cma12g00139 315 Gene3D - 114 227 IPR013805 -
Cma12g00139 315 PRINTS GrpE protein signature 155 171 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 PRINTS GrpE protein signature 183 198 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 PRINTS GrpE protein signature 238 253 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 PRINTS GrpE protein signature 265 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 136 228 IPR013805 -
Cma12g00139 315 Pfam GrpE 130 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 MobiDBLite consensus disorder prediction 289 305 - -
Cma12g00139 315 PANTHER GRPE PROTEIN HOMOLOG 1 300 - -
Cma12g00139 315 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 233 288 IPR009012 GO:0006457
Cma12g00139 315 MobiDBLite consensus disorder prediction 282 315 - -
Cma12g00139 315 Gene3D Head domain of nucleotide exchange factor GrpE 231 286 IPR009012 GO:0006457
Cma12g00139 315 CDD GrpE 151 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 ProSitePatterns grpE protein signature. 241 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 PANTHER GRPE PROTEIN 1 300 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma12g00139 315 Hamap Protein GrpE [grpE]. 72 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00139 K03687 GRPE; molecular chaperone GrpE - csv:101215875 427.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00169 Cma-Chr3:2228524 Cma12g00139 Cma-Chr12:606135 3.45E-60 dispersed
Cma12g00139 Cma-Chr12:606135 Cma16g00911 Cma-Chr16:6816861 5.39E-09 dispersed
Cma12g00139 Cma-Chr12:606135 Cma07g01117 Cma-Chr7:6071597 1.69E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00139 Cma_Chr12 FPKM 11.450517 12.811835 12.337412 12.794146 27.83177 21.976595 30.406548 18.587944 21.329193 23.378759