Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00140 ATGAACCGACAACTTTGGCAGGCTTTTGCCGGCAAGTCTGTCCATACTCACACTGTCGGTTCTGAGGTTTACTATTTCGTACAAGGACATGTCGAGCAAGCTACATACATACCATCACTTTCTCAGTCTGTTCTTTCTAATCCCGCCACTAAATGTCTCGTTACTAGCACTGATTTTCATGCCGATTCTCTTTCTGATGAGGTCTGCATTAAGTTGAATCTTCATCCCATTCGGTCTGGTCAGGATGAGTCTGTTCTGGTTTCCCGATTTGGTCGTTGTGATGATAATGGCGGGGAGAGGAATAAGATTGAGTCGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTGCTGTGCGGATTCTGTTTTTCCTCCCTTGAATTACCGGGCTGATCCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTCACTACTGGGTGGAGTAAGTTCGTTAATCATAAGAAGCTGATTGCCGGTGATTCCGTCGTTTTCGCGAAGAATCTTAGAGGGGATATGTTCGTTGGCATTCGTCGTGCCTCAACCTCTATCACAAGGGCTATCGCAGGCGGTGGCCGGTGGAATAGCCAGAATGGTGGAGCAAGATGCAGTTTGGAGAAGAATTGTTCTGGCGATGGAGGAACAAAAGTTTTCTCCCGGAGGAATATTGGGAAGCTGCCGGCCGAGGCAGTTGCCAATGCTGCGGAATTGGCCGCGCAATTTAAGCCATTCGAGTTGGTTTATTATCCTAGGGCTGGTCGGTCGGAATTTGTTGTTCAAGTCGAGAAGGTGAATGAATCAAAGAATTATCAGTGGTATTCTGGAACAAGAGTGAAAATGGCCATGGAGACCGAGTATTCGAAGATGACATGGTATCAAGGGACTGTAACCTCAGCATCTGTTCCTGAGCACGGACCTTGGATGGGTTCTCCATGGCGTATGCTTGAGGTTACATGGGATGAAATTGATGCTCTGCAGAGTGCTAAGTATGTGAGCCCTTGGGAAGTTGAACTGGCTACGCCCACTCCTCCAATACAACCTCCTCTTCACCCAGCAAAGAAATTTAGAGGTCTCCCGAAATCTGGGATGCTGAATGGTGAAGCAGAGCTGTTTTCACCTCTGATGAATTTCGTTGATTCAACAATGGAACAATTCAACCCATCATTGTTGAATCTCAACTCTTTTCCTGCTTGCATGCAGGGAGCCAGGCAAAAGTTATTCTGTGAATCTAGGTTATTCAACCCATGTAAAGAAATTACTTCACTAACATGTGATGAAAGTTCCATGAGCGAGCTGAATGCTGCGAAGACAATGCAAATGGTGTCTACTGACCTCCTTATTGGTAGTGTGCAGTTTGATACCTTGTCGCCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGAACTGCTGAGAACCAGAACTGCTGCAACTCAGCTAAAGCTGGAGTAAATTCAATTCAGTTGTTTGGTCAAGTCATCTATATGAATCCGCCTGTTGAAAATGGTGTTAGCACTAATGATGGTGGCAAGAATCCTAATCAGTCCGCATGA 1635 46.18 MNRQLWQAFAGKSVHTHTVGSEVYYFVQGHVEQATYIPSLSQSVLSNPATKCLVTSTDFHADSLSDEVCIKLNLHPIRSGQDESVLVSRFGRCDDNGGERNKIESFAKILTSSDANNGGGFSVPRCCADSVFPPLNYRADPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFAKNLRGDMFVGIRRASTSITRAIAGGGRWNSQNGGARCSLEKNCSGDGGTKVFSRRNIGKLPAEAVANAAELAAQFKPFELVYYPRAGRSEFVVQVEKVNESKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLEVTWDEIDALQSAKYVSPWEVELATPTPPIQPPLHPAKKFRGLPKSGMLNGEAELFSPLMNFVDSTMEQFNPSLLNLNSFPACMQGARQKLFCESRLFNPCKEITSLTCDESSMSELNAAKTMQMVSTDLLIGSVQFDTLSPDSQASVLSFATGTAENQNCCNSAKAGVNSIQLFGQVIYMNPPVENGVSTNDGGKNPNQSA 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 610877 613604 - CmaCh12G001400.1 Cma12g00140 304630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00140 544 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Cma12g00140 544 CDD B3_DNA 105 206 IPR003340 GO:0003677
Cma12g00140 544 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 533 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma12g00140 544 Pfam Auxin response factor 261 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma12g00140 544 Gene3D - 299 369 - -
Cma12g00140 544 PANTHER AUXIN RESPONSE FACTOR 1 533 - -
Cma12g00140 544 SMART B3_2 106 208 IPR003340 GO:0003677
Cma12g00140 544 SUPERFAMILY DNA-binding pseudobarrel domain 101 208 IPR015300 -
Cma12g00140 544 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
Cma12g00140 544 Gene3D - 103 207 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00140 - - - csv:101216118 751.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02570 Cma-Chr4:17655759 Cma12g00140 Cma-Chr12:610877 4.70E-106 dispersed
Cma07g00923 Cma-Chr7:4422962 Cma12g00140 Cma-Chr12:610877 7.06E-103 dispersed
Cma12g00140 Cma-Chr12:610877 Cma20g00489 Cma-Chr20:2380923 5.64E-105 dispersed
Cma12g00140 Cma-Chr12:610877 Cma05g00481 Cma-Chr5:2267330 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35954 PF02362 B3 1.20E-19 CL0405 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00140 Cma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.165849 0.201941 0.0 0.0 0.0 0.0