Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00141 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGACGATGCCTTCTATAGGTATAAGATGCCTCGGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATTAAGACTAATGTGGTTAACATGGTGGAAATCGCAAAAGCCTTGGGCAGGCCTGCTTCTTACACTACCAAGTACTTTGGATGCGAGCTTGGTGCACAATCCAAATTCGATGAGAAAACTGGGACTTCTCTTGTAAATGGTGCACATGATACAGCCAAGCTGGCTGGTCTGCTCGAGAACTTTATCAAGAAGTATGTTCAATGCTATGGATGTGGTAACCCCGAAACGGAGATTATCATCACGAAGACGCAGATGATCACCATGAAATGTGCTGCCTGTGGATTTATATCTGATGTTGACATGAGGGATAAAATCACAACATTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAGGCTATGAGGCGGGCTGAGAAGGAAAGACTTAAGGAGGGCGAGGCTGCTGATGAGGAGCAGAAGAAGCTAAAGAAGGATTCGGTGAAGAAGAAAAGCACTAGTGGAAATTCAAAGGAAACTGTTACGAAAGTGCCAAGCAAGAAGAAGAATAATGGCTCGGATGACGATCATTCCCCAGTTCCTATCCATGCTAGTGGTAAAGACGAAGTAGCTGATGACGATGACGGCGATGACGATGTGCAGTGGCAAACGGACACATCTTTAGAAGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCGGTCACTGCTGATATGGTCATGCTGTCTACCGAAGAAACTACGTCGTCTAAAAAGCCCTCTGAACATGAGAAGTCTTCGATCAACGGAAACAAGAATGGAAATGGAGTGTCTCCCCATGTTGCTCTTGTCAACGAGATCAAAGATTATTTGAAGAAGGGTTCCTCCGCTGCCAACCTCAAATCATTTTTGGAATCACTTTCTGGAACTCCCCAGGAGATTGTGAATGCCTTAGTTGAGGCTCTTTTTGATGGCGTTGGAAAAGGTTTCTCAAAGGAGGTGATGAAGAAGAAGAACTTCTTGGCTGCAGCTGTTGCTCTGGAGGGATCACAGATAGCTCTATTGCGTGCCATTGAATCTTTTTGTCTCAATACGAGTTCGGAGGCTGCTAAGGAGGTTGCTCTGGTTCTGAAATCGCTATACGACAGCAACCTGATCGAGGAGGAATTTGTATTAGAGTGGTACCTGAAGGGCGTGGCTGGTGCTAACAAAAGTTCTCCGATCTGGAATCATGTAAAGCCATTCATCGAATGGCTCCAGAACGCGGAGTCCGAGTCCGAGACCGAAGAAGGGTAA 1347 45.58 MALQNIGASNRDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKITTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKSTSGNSKETVTKVPSKKKNNGSDDDHSPVPIHASGKDEVADDDDGDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTEETTSSKKPSEHEKSSINGNKNGNGVSPHVALVNEIKDYLKKGSSAANLKSFLESLSGTPQEIVNALVEALFDGVGKGFSKEVMKKKNFLAAAVALEGSQIALLRAIESFCLNTSSEAAKEVALVLKSLYDSNLIEEEFVLEWYLKGVAGANKSSPIWNHVKPFIEWLQNAESESETEEG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 614875 616221 - CmaCh12G001410.1 Cma12g00141 304631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00141 448 ProSiteProfiles W2 domain profile. 290 446 IPR003307 GO:0005515
Cma12g00141 448 MobiDBLite consensus disorder prediction 267 294 - -
Cma12g00141 448 Gene3D - 105 145 - -
Cma12g00141 448 CDD W2_eIF5 300 444 - -
Cma12g00141 448 SMART 542_3 355 442 IPR003307 GO:0005515
Cma12g00141 448 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Cma12g00141 448 Coils Coil 159 179 - -
Cma12g00141 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 446 - -
Cma12g00141 448 MobiDBLite consensus disorder prediction 143 238 - -
Cma12g00141 448 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Cma12g00141 448 Pfam eIF4-gamma/eIF5/eIF2-epsilon 368 446 IPR003307 GO:0005515
Cma12g00141 448 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Cma12g00141 448 Gene3D - 2 104 - -
Cma12g00141 448 MobiDBLite consensus disorder prediction 148 190 - -
Cma12g00141 448 MobiDBLite consensus disorder prediction 199 227 - -
Cma12g00141 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 446 IPR045196 GO:0003743|GO:0006413
Cma12g00141 448 Gene3D - 296 437 - -
Cma12g00141 448 SUPERFAMILY ARM repeat 301 440 IPR016024 -
Cma12g00141 448 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00141 Cma-Chr12:614875 Cma01g00737 Cma-Chr1:3882381 4.86E-07 dispersed
Cma12g00141 Cma-Chr12:614875 Cma05g00482 Cma-Chr5:2273133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00141 K03262 - csv:101210873 721.079