Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00143 ATGGCGCGGTTTGTGGTTCTCTTTGCTCTCTGTGTGCTTCCCGCACTCATCGCCGCTACCCGCCCCGTCAGGACTCCGTTTGTTGTTCGTGGTAAAGTCTACTGTGATACTTGTCTTGCCGGCTTCGAAACCTCGGCCACTACCTACATTCCCGGTGCTAAGGTCAAAATCGAATGCAAGAACAGGAACACCATGGAACTTCTCTACAGCCAAGAGGCCACAACAGACTCCACTGGTTCTTACTCACTCTTAGTCAACGAGGACCACGAGGACCAAGTTTGTGATGCTTTGCTAATCAGCAGCCCTGAGAAGGAGTGCTCGGCAGTATCTGAAGGCCGTGACCGTGCCCGTGTGATCCTCACCCGCTACAATGGTATTGCCTCAAACGACCGTTACGTCAATGCCATGGGTTTCGCAAGAAATGAAGCTTTGTCTGGCTGCAACCAAGTCCTCAGCCAATACCAGGACATCGAAGATTAG 480 52.08 MARFVVLFALCVLPALIAATRPVRTPFVVRGKVYCDTCLAGFETSATTYIPGAKVKIECKNRNTMELLYSQEATTDSTGSYSLLVNEDHEDQVCDALLISSPEKECSAVSEGRDRARVILTRYNGIASNDRYVNAMGFARNEALSGCNQVLSQYQDIED 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 619268 621397 + CmaCh12G001430.1 Cma12g00143 304633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00143 159 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 1 158 IPR006041 -
Cma12g00143 159 Pfam Pollen protein Ole e 1 like 29 112 - -
Cma12g00143 159 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00143 - - - csv:101211620 271.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00485 Cma12g00143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00806 Cma-Chr4:4136168 Cma12g00143 Cma-Chr12:619268 6.78E-40 dispersed
Cma11g00880 Cma-Chr11:4457313 Cma12g00143 Cma-Chr12:619268 3.39E-29 dispersed
Cma11g00881 Cma-Chr11:4459520 Cma12g00143 Cma-Chr12:619268 5.46E-26 dispersed
Cma12g00143 Cma-Chr12:619268 Cma14g01146 Cma-Chr14:8967315 1.83E-08 dispersed
Cma07g00190 Cma-Chr7:897225 Cma12g00143 Cma-Chr12:619268 2.44E-32 transposed
Cma10g00783 Cma-Chr10:3586507 Cma12g00143 Cma-Chr12:619268 7.72E-29 transposed
Cma11g00749 Cma-Chr11:3641012 Cma12g00143 Cma-Chr12:619268 4.49E-30 transposed
Cma12g00143 Cma-Chr12:619268 Cma05g00485 Cma-Chr5:2282997 1.79E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00143 . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g379 . Blo12g00697 . Bda03g00502 Bpe02g00095 Bpe04g00457 . . Cmo05g00507 Cmo12g00113 . . . Car12g00133 Sed04g0127 . Cpe07g00120 Bhi04g00736 Tan02g2367 Cmetu03g1991 . Hepe10g0520 . Lcy13g1582 Cla08g01092 Cam08g1545 Cec08g1119 Cco08g1246 Clacu08g1247 . Cre08g1029 . . Cone17ag1234 Cone20ag0491 . . . Cme03g01505 . Blo18g00213 . Bda01g01393 Bpe02g01607 . . . . . . Cma12g00143 Cma05g00485 Car05g00432 . Cpe11g00424 . . . . . . . . . . . . . . . Lsi08g00948 . Chy03g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005917 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00143 Cma_Chr12 FPKM 3.583744 2.106057 5.421038 3.695392 33.738747 37.961128 35.587494 28.181049 27.215603 25.870804