Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00144 ATGACGCAATTAGAAAATTTGGAGGGTAAGCTGCCACGGATATTAAGAATGGCTGCTGCAGTATTTCACCAATCTCTTGGGACTTTTCTTCCCCATGGACAAGCTAATGTTGCAAGTAATGTGCCAAAATTAAATTCAAAATGTTTCAAGGTCGAAGTTGGGATCTTCAGAAAGAAGTCTCCTAGATCTAGAAATACTTCTATAAGAGCAATTCAATCATCTTCTTCTCAAACTTCAGTTGTTGATCCCATTTTATCACCTTCAATCAACACCTCTGATGACTCGCAAAAAAAGCAGAATGAAGCTGCTTTGATCTTGATTCGACATGGAGAATCGTTGTGGAACGAAAAGAACTTATTTACCGGCTGTGTTGATGTGCCACTGACCAGGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGTAACATACCTGTCGACATGATCTATACGTCGTCGCTCATTCGTGCACAGATGACTGCTATGCTTGCCATGACTCAACATCGTCGTAAGAAGGTTCCAGTTATTATTCACAATGAAACCGAGCAGGCAAGGGTTTGGAGTCAAATATTTAGCGAAGAAACCAAAAAACAATCCATCCCAGTAATAGCATCTTGGCGATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAGGAGACTGCCGATAGATATGGTAAAGAACAAGTCCACGAATGGCGTCGGAGTTATGACATTCCTCCCCCAAATGGCGAGAGTTTGGAAATGTGTGCGGAGAGAGCTGTTGCTTATTTTAAAGACCAAATTGTCCCCCAGCTGCAATCTGGAAAGAACGTAATGATAGCAGCACATGGAAACTCATTGAGGTCCATAATCATGTATCTAGACAAACTAACTTCTCAAGAGGTTATTAGCTTAGAGCTATCAACTGGAATACCCATGCTCTACATATTTAAAGAAGGAAACTTCATTAGGAGGGGAAGTCCTGCTGGACCTTCTGAGGCAGGCGTTTACGCCTATACCAGGCGTTTGGCTCTCTACAGACAGAAGTTAGATGAGATGTTAAATTAA 1065 41.78 MTQLENLEGKLPRILRMAAAVFHQSLGTFLPHGQANVASNVPKLNSKCFKVEVGIFRKKSPRSRNTSIRAIQSSSSQTSVVDPILSPSINTSDDSQKKQNEAALILIRHGESLWNEKNLFTGCVDVPLTRKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTQHRRKKVPVIIHNETEQARVWSQIFSEETKKQSIPVIASWRLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGNFIRRGSPAGPSEAGVYAYTRRLALYRQKLDEMLN 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 621612 626912 + CmaCh12G001440.1 Cma12g00144 304634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00144 354 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 106 115 IPR001345 GO:0003824
Cma12g00144 354 CDD HP_PGM_like 104 323 IPR013078 -
Cma12g00144 354 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 11 353 - -
Cma12g00144 354 Gene3D - 93 325 IPR029033 -
Cma12g00144 354 Coils Coil 346 354 - -
Cma12g00144 354 Pfam Histidine phosphatase superfamily (branch 1) 196 307 IPR013078 -
Cma12g00144 354 Pfam Histidine phosphatase superfamily (branch 1) 104 180 IPR013078 -
Cma12g00144 354 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 101 328 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cma12g00144 354 SMART PGAM_5 103 289 IPR013078 -
Cma12g00144 354 SUPERFAMILY Phosphoglycerate mutase-like 104 320 IPR029033 -
Cma12g00144 354 PANTHER PHOSPHOGLYCERATE MUTASE 11 353 IPR005952 GO:0004619|GO:0006096|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00144 K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] - csv:101211372 608.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00486 Cma12g00144 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00570 Cma-Chr2:3266873 Cma12g00144 Cma-Chr12:621612 2.53E-09 transposed
Cma07g00531 Cma-Chr7:2298857 Cma12g00144 Cma-Chr12:621612 4.21E-148 transposed
Cma12g00144 Cma-Chr12:621612 Cma05g00486 Cma-Chr5:2286696 1.67E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002531 1 2 1 1 1 1 3 1 1 2 1 2 3 2 2 3 2 4 3 2 2 2 2 2 1 2 2 1 5 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00144 Cma_Chr12 FPKM 14.641509 12.989145 1.907991 1.254325 6.068403 7.089832 6.678638 1.23374 1.387334 1.32317