Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00147 ATGGGAGGACGAGATCATCTGCTTGAATTTCCTTTCTTTGTTCTTTTGATCTGTTTCTCTTCGATATCTGTTGGTTTTGCCTGTTTTCTCGCCATTTCAAGGCTGATGGAGCATTTTCAGAATGACGATCTTGCTGTGTATGATTTTGACGATGGTGGATTTTTCTCTGACGATGACTTCCATACTGATCAGAATATTGAGCATATAGACTCCGACTTCGAAGACGACATGGATACAAGCACGCCGAAGTCGGATACCTCTGCTTTCGACGCTAGGAATGGTAAAGATATCCAGGGAATACCTTGGGAGAGGTTCGCCTTTACCAGAGATAATTATCGGGAAAGACGTTTGAGCCAATACAAGAACTATGAGAGTCTGTCACGCTCTCGTGTGGAACTGGAAAAGGAATGCTTGCAAGTGGAGAAGGGGAATAATTTTTATGACTTCCAGTTCAATACGAGGCTTGTTAAATCAACCATTGTTCATTTTCAGCTAAGAAATCTCTTGTGGGCAACTTCTAAGCATGATGTATACCTTATGCAAAACTACTCAGTAATGCATTGGTCTCCATTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCTAAACAAATTGTTCCCACCGTGAAACGCCCTGGAGTCTCATCCCAGTCTCTGTCTAGAGTTCAGATAAGTGCAATGTCAGTTAAGGAGAACTTGATTGTGGCTGGTGGTTTCCAAGGGGAACTAATTTGCAAGTACTTGAATCATCCTGGAGTTGCATTTTGCACCAAAATGACAACAGAAGAAAATGCAATCACAAATGCTGTTGATATATTTCATAATCCCAATGGTGCAATGAGGATCGTCACAGGAAATAATGATGCAAAAGTTAGGATTTACGATGCCAAGACTTTTGCTTGCCTCAACGGCTTCACAGTTGGCTGGTCCGTAAATAACACCTCTGTTAGTCCTGATGGGCGGATGCTTGCAGTCCTTGGGGATACTACAGAGTGCCTGATTGCAGATGCCAACTCTGGCAAGGTGATTGAGAGCCTCAAAGGGCACTTAGATTACTCTTTTGCTTCTGCCTGGCACCCTGATGGAAACATTTTGGCCACTGGGAACCAAGACACCACCTGCAGGCTGTGGGACATAAGGAATACGTCCAAGTCCATAGCTGTGCTCAAGGGAAGAATGGGAGCAATCAGATGCGTCAAATTCAGTTTGGACGGTAAATTCCTGTCGATGGCTGAGCCTGCCGATTTCGTCCATATCTATGAAAGTCGCACAGGTTATGAACAAGCACAAGAAATCGATCTGTTTGGGGAAATTGCTGGAATCTCCTTTAGTCCCGACACCGAAGCTCTGTTCGTTGGCGTTGCTGATCGAACCTATGGTAGTGTGTTAGAGTTTAACAAACGACACCATAATAAGTACATAGATTCCATCTTCTAG 1437 43.91 MGGRDHLLEFPFFVLLICFSSISVGFACFLAISRLMEHFQNDDLAVYDFDDGGFFSDDDFHTDQNIEHIDSDFEDDMDTSTPKSDTSAFDARNGKDIQGIPWERFAFTRDNYRERRLSQYKNYESLSRSRVELEKECLQVEKGNNFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSPLLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISAMSVKENLIVAGGFQGELICKYLNHPGVAFCTKMTTEENAITNAVDIFHNPNGAMRIVTGNNDAKVRIYDAKTFACLNGFTVGWSVNNTSVSPDGRMLAVLGDTTECLIADANSGKVIESLKGHLDYSFASAWHPDGNILATGNQDTTCRLWDIRNTSKSIAVLKGRMGAIRCVKFSLDGKFLSMAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNKYIDSIF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 636986 642740 + CmaCh12G001470.1 Cma12g00147 304637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00147 478 SMART WD40_4 240 295 IPR001680 GO:0005515
Cma12g00147 478 SMART WD40_4 339 378 IPR001680 GO:0005515
Cma12g00147 478 SMART WD40_4 382 421 IPR001680 GO:0005515
Cma12g00147 478 Gene3D - 246 474 IPR015943 GO:0005515
Cma12g00147 478 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Cma12g00147 478 PANTHER OS03G0386000 PROTEIN 36 478 - -
Cma12g00147 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 381 - -
Cma12g00147 478 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cma12g00147 478 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 36 478 - -
Cma12g00147 478 SUPERFAMILY WD40 repeat-like 221 458 IPR036322 GO:0005515
Cma12g00147 478 Pfam WD domain, G-beta repeat 341 378 IPR001680 GO:0005515
Cma12g00147 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00147 - - - csv:101222353 798.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00488 Cma12g00147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01415 Cma-Chr1:9983508 Cma12g00147 Cma-Chr12:636986 0 dispersed
Cma09g00653 Cma-Chr9:3104256 Cma12g00147 Cma-Chr12:636986 0 dispersed
Cma12g00147 Cma-Chr12:636986 Cma14g01483 Cma-Chr14:11263011 4.27E-169 dispersed
Cma12g00147 Cma-Chr12:636986 Cma03g00866 Cma-Chr3:6430815 3.89E-06 wgd
Cma12g00147 Cma-Chr12:636986 Cma05g00488 Cma-Chr5:2304078 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00147 Cma_Chr12 FPKM 58.516281 65.401085 30.275177 29.201204 11.746002 11.512826 10.977323 32.678539 31.810566 34.693115