Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00151 ATGGCGGAAGGGCAGGATTCTTCGTTAATCCACATCGACGATGCCTTTGATTCTCTTCCGGATTCCATAATTCTTATGATTTTCAACTCCGTTTCCGATGTCAAAACCTTGATCCGTTGCAGAGCCGTCTCGAAGCGATTCAACTCTCTCGTTCCTCATTCCGATTCTCTCTTTCTCAAGGTCGATTGCGTCATTTCTTCCGATTCTGATTCCGATGAAAACTCGTTTCTCTACGGATTTTTCAAGTCCGTTGTGAAATCGTTCTTCGATTTGATTTCTCCTATCCTCGTTCAGTCCGAATCGCAGAACTCTCCGGCGCAAATCCTCCGGCAGTTTATCCGGATCCAGCGTCTGGAGATCGAGTTTCCGACGGGAGATCTTAAAGTTGAGAGAATCGGAGGCGTTAAATGGAGAGCGGAGTTTGGGATTACGCTTAGGAGTTGCGTGATTTTGCTATTTCGAGGGATTAGGTATGAGTCGTATGATGAGACGGCTGTGGCAGATGGTTTCGATTTCATCGAAGAACTGAAATCGAAGGTGTTTTTGACGATTAGTACTCTGATTACGGCATCGGCGAGGCACCACGTGTTGGCGGAGTTGATCGAGGAGCATTTGGAGATGGAGAGTCTTGTTTTGCGAGACAGGGAAGGGGAAGGCGTGGTGGAGATGGACAAGGACGGGTTAGATGAGTGGAGGAAATCGAGAGAGCGTAGCGGCGAAGACGGCGGCGGAGTAGCGGCGGAGGGAGGGGAATGGCGACGGACGAGAACGAGGGTTCCGAGCACTACGGTGAGGATGAGACATCTGCCGAGGGTGGAGCTCCGGCGAGGGATGTGGATAGAGGACGCCACGTTGGTGGTGGTGAGGCCAACCACAAATGCCAGCAAGGATAAGACTGATGACATGGAGAAAGAGAATGATGAGGTGGCATTGAGGACGTTCGAAGGTGATGATGTGTACGGTGAGGCAGTGGGAGCGTTACTGAAGAAGGGCCGGAGGTATCAGTTAGAAATGAACTCTTTCTAG 1026 50.58 MAEGQDSSLIHIDDAFDSLPDSIILMIFNSVSDVKTLIRCRAVSKRFNSLVPHSDSLFLKVDCVISSDSDSDENSFLYGFFKSVVKSFFDLISPILVQSESQNSPAQILRQFIRIQRLEIEFPTGDLKVERIGGVKWRAEFGITLRSCVILLFRGIRYESYDETAVADGFDFIEELKSKVFLTISTLITASARHHVLAELIEEHLEMESLVLRDREGEGVVEMDKDGLDEWRKSRERSGEDGGGVAAEGGEWRRTRTRVPSTTVRMRHLPRVELRRGMWIEDATLVVVRPTTNASKDKTDDMEKENDEVALRTFEGDDVYGEAVGALLKKGRRYQLEMNSF 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 661816 662841 + CmaCh12G001510.1 Cma12g00151 304641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00151 341 PANTHER OS05G0510400 PROTEIN-RELATED 13 341 IPR044809 -
Cma12g00151 341 Gene3D - 15 62 - -
Cma12g00151 341 PANTHER BNAA07G10620D PROTEIN 13 341 - -
Cma12g00151 341 Pfam F-box-like 17 57 IPR001810 GO:0005515
Cma12g00151 341 ProSiteProfiles F-box domain profile. 13 61 IPR001810 GO:0005515
Cma12g00151 341 MobiDBLite consensus disorder prediction 231 254 - -
Cma12g00151 341 SMART fbox_2 19 60 IPR001810 GO:0005515
Cma12g00151 341 SUPERFAMILY F-box domain 14 74 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00151 - - - csv:101203038 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00494 Cma-Chr5:2344032 Cma12g00151 Cma-Chr12:661816 1.33E-131 dispersed
Cma12g00151 Cma-Chr12:661816 Cma18g00479 Cma-Chr18:2716580 2.67E-52 dispersed
Cma12g00151 Cma-Chr12:661816 Cma05g00493 Cma-Chr5:2341478 2.89E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g390 . . . . . . . . . . . . . Car12g00139 Sed04g0136 . Cpe07g00127 Bhi04g00750 Tan02g2380 Cmetu03g1402 . Hepe10g0511 . Lcy13g1571 Cla08g01100 Cam08g1554 Cec08g1127 Cco08g1254 Clacu08g1256 . Cre08g1038 . . . . . . . Cme03g01514 . . . . . . . . . . . Cma12g00151 . . . . . . . . . . . . . . . . . . . Lsi08g00957 . Chy03g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009181 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 2 1 0 3 1 1 1 1 1 1 1 1 1 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00151 Cma_Chr12 FPKM 16.268032 18.031853 1.346868 1.359483 5.243658 5.965584 5.60813 0.139197 0.235932 0.124286