Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00154 ATGTCGCACTTCGGAAGATCGGGTCCCCCCGATATCAGAGATACTTACTCCCTTCTCGTCCTCAACATCACATTTCGAACCACTGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGAACTGGGGATTCCCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGAAAGGTGATGGAGTCATCTTCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGGAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACACCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGAAGGAGAGAAAGAGATGATGAAAGGCATAGTGCAAGCCGCTCCGAAAGAAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCATCGAGGGGTAGAAGTGATGATGAACATTCACCTCAGAGAGAGAACGGCTCACTAGATGATAAGCCAGTCGATTCTCGTAGTCCATCTCCTGCTAAATCCGATGCCGATGAGTGA 753 50.07 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSEREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 672217 675779 - CmaCh12G001540.1 Cma12g00154 304644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00154 250 MobiDBLite consensus disorder prediction 100 250 - -
Cma12g00154 250 PANTHER OS08G0486200 PROTEIN 1 247 - -
Cma12g00154 250 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Cma12g00154 250 MobiDBLite consensus disorder prediction 100 115 - -
Cma12g00154 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 247 - -
Cma12g00154 250 SMART rrm1_1 17 90 IPR000504 GO:0003723
Cma12g00154 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Cma12g00154 250 Gene3D - 4 105 IPR012677 -
Cma12g00154 250 MobiDBLite consensus disorder prediction 123 250 - -
Cma12g00154 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00154 K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8 - csv:101216322 311.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00497 Cma12g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00154 Cma-Chr12:672217 Cma09g00914 Cma-Chr9:4556959 1.05E-13 dispersed
Cma14g01650 Cma-Chr14:12360867 Cma12g00154 Cma-Chr12:672217 2.72E-13 dispersed
Cma15g00503 Cma-Chr15:2280831 Cma12g00154 Cma-Chr12:672217 7.19E-13 transposed
Cma19g00256 Cma-Chr19:1832249 Cma12g00154 Cma-Chr12:672217 5.96E-61 transposed
Cma12g00154 Cma-Chr12:672217 Cma05g00497 Cma-Chr5:2354694 1.66E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g401 . Blo12g00705 . Bda03g00492 Bpe02g00103 Bpe04g00448 . Bma01g02615 Cmo05g00520 Cmo12g00119 . . . Car12g00143 Sed04g0139 . Cpe07g00130 Bhi04g00752 Tan02g2384 Cmetu03g0980 . Hepe10g0506 . Lcy13g1568 Cla08g01104 Cam08g1557 Cec08g1130 Cco08g1257 Clacu08g1259 . Cre08g1041 . . Cone17ag1223 Cone20ag0501 . . . Cme03g01517 . Blo18g00134 Bda11g00763 . . . . . . . . Cma12g00154 Cma05g00497 Car05g00445 . Cpe11g00435 . . . . . . . . . . . . . . . Lsi08g00960 . Chy03g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001751 2 2 2 1 2 2 4 2 2 1 2 2 3 2 2 2 2 4 4 2 2 2 2 2 2 2 1 4 5 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00154 Cma_Chr12 FPKM 20.589342 20.423275 19.228765 19.77883 40.075886 37.979393 37.31612 31.642271 30.254929 28.269304