Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00157 ATGTCGCCGGGCGGATGTATTGAGAATGGGGACGCGGAAGCTGCTGGTAACTGCAAATCCGGTGATTCGTATTGCGAGCATTGTGGTCGTGGTTGTGGCAGTGGTTCGGCGGATTATTCTTCTTTGCCGGCTTTTTCTTGCTCTTCTTATTCACTTTGGCTTGATTCTGCGCGGTTGAGAGAGTCGGGGAAGTTTTGGCGGATTCTGGTTGCTTCTGCTAAAGGCTTCACAATCGGAGCTGGTCTTAAAGGTGGACTCTCCCTGTTTTCGATCCTTGCTGGATTGAAGCGGAGAAAGGCTTTGGCCTCCCTCGGGAAGAAAGGAGTGATTACGAATCGTGATGTAATTTCCATGGCTTTGAAGGAGACTTTGAGGTACGGCCTGTTTCTTGGAACCTTTGCTGGGACATTCGTTTCCATCGATGAGATAATAGGCAATCTGGCAGGTCACCGTAGGACTGCAAGATGGAGGGCTCTATCAGCGGGAGCATTAGCTGGGCCATCAATGCTTCTGACTGGGTTAAATACGCAACATAAGACCTTGGCTATCTACATTTTTATGCGTGCTGCGGTCTTGGCAGCGCGTTGTGGGATTAAAAGCAAGCGGTTCGGCCATATTTGTAAGCCGCTCACGTGGTCATATGGTGACATCTTCCTTATGTGTCTCTCCTCTTCGCAGATCTTGTCTGCGTATGTGTTGAAGCAAGACAGCTTACCACCATCATTTAGTTCCTTTCTCAATATACATGGTGGAAAAGATACTGTAATCCTGGAAGGTTTAAAGAGTTTTGTATCAGGCATGCCATCTTCTAATAAATTTAAAGCAATAGAAAAGTACTACAGGGCAATGGGTGCAGATGTCAAATTAGATCTGCAAATGAAGACTCCATGCACGATTATACATGGAAATCAATCATGTGGTGGCCATGTTCTTAACTTTCTCATTCAAGGATATAAAAGAGCATTGCCAGTTTACCTACCTGTTTATCTTGTCCCAGCCCTGATAGTTCATCGTGAAGGTCTCATGAATAGGATGTGGACATGCCTTACTGCAAGAACTTTCAAGAAAATAAACATTCCCTTGGTTGCTCTGGCAACGAGCGAGAGCTCCTGTTCTTGTCCTGAAAAGCATATACTTTTTGAGCAGTTCTTAGCTGGTTTGGCTCTGGCCATTGAGAAGAAGAGCCGGAGGATTGAAATCTCACTCTATTGCCTTGCGAGAGGCATCGAGAGCTTCTTCAGTTGCATGACGGATCTGGGATACTTGCCACAATCATTGAATTTTAAGAGAGCGGATGTGATAATCTTTAGCATATCAACTGCCATTATAATGCACTGCTATGCACAGGAAAGAGAGACCTCGTCTTCGTGTAGAATCGGCGGCCAGTCTCCGAGCAAACAAGAGCGCCTTGCTCGAGATGCATCTCCAGAAGAGCATGGTGGAATCGTTGAAGGAACTCATGATTCCTTGAAACCGAACAGTCTGCGTCTGTATACTTTAAACAAAAAGAAAAAGAAGAAGAAAGCGCGCTCACCGCCCCCAGGTCGGACTGCGCGGGAAGATGCCGAGCGCTTGAATTCTCCTATTTATCTTATCGTCGGCTTAGTCCGGGGGAAATTGTTGAGTATGGCAAGTTCAGGAGATTATCTTTCCCAGATTGACATTTCGAACGAGGAAAAGGACAAGCTCGTGGCGGAAGTTATCCGCTATATCATATTCAAAACTCATCAAAATTCTGGATGTCCCATCAAAAGGGAAGAGCTTACTCAGATCGTAACAAAAAATTATAGGAATCGAGGATTGCCGGCTATTGTGATAGAAGAAGCTAAAGAGAAGCTGTCAAGCATTTTTGGTTATGAGTTGAGGGAACTTCAAAGAGCACGGCCTTCATCCACTGCCCAAGGGCACCCTCCTCAACATAATGTTGTAGATTCAAAATCCTATGTTCTCATAAGCAAGCTTCCTGCGGAGGTTTATAGAAAGTATGTTGAGGATGTCGATACCGCACACGTGACTGAGTGCCACTTTTTGCTTCATAATGGAACCTGTCAATACACTGCAGAAAGCCTTTGGCATCACTTGAGACGAATGGGGTTATCTGAAAATGATGAAAAACATCCAGTCCTTGGAAACATCAAGCAGGCAGTAGAGTTGCTTGTCCAGCAAAGATATCTGCAGAAGGCCAAAATAAATGGTCCTGAAGGGAATATCACGTTCTACGAGCTTGCTGAAAGAGCTATAGATGGACCAGTTAGTGAAAAGATTAAAGAATATGTAGCACAGCCGCTACTTTATGCGTTGCGGCTTATTATTATCATCACTAACAATCAAGAATATGAACTTACAAACAACTTCTTCCTTCATCATATTGGCTGGCCCATATTAATAAGAGGGCTGACTATTGTCTCAACATTGCCTCCAGCTAATCTTGATGACCTCAAACTTCGCAAGGACGAGTATCCTTGCTTTACCTTCGTCGTTCACAAGATGTCGAACCCAAAAGCTACTCGAGGCTCTAGAATGGAAATTTCTACAGCTCACCATGTCGTTGATGCACATCGACAACATTCTTATTGGCACACTCGGCTACTAGAGCTTGCATCGCCTATAGAAACTGTGGCAAAAGACTTGGCCCATGCCCTGGCATTCATGGCACCTCCTTGTAAATTGCTTCTCTTGCAAGGATCCTTGAAATGGCTAAATAACTGA 2709 44.74 MSPGGCIENGDAEAAGNCKSGDSYCEHCGRGCGSGSADYSSLPAFSCSSYSLWLDSARLRESGKFWRILVASAKGFTIGAGLKGGLSLFSILAGLKRRKALASLGKKGVITNRDVISMALKETLRYGLFLGTFAGTFVSIDEIIGNLAGHRRTARWRALSAGALAGPSMLLTGLNTQHKTLAIYIFMRAAVLAARCGIKSKRFGHICKPLTWSYGDIFLMCLSSSQILSAYVLKQDSLPPSFSSFLNIHGGKDTVILEGLKSFVSGMPSSNKFKAIEKYYRAMGADVKLDLQMKTPCTIIHGNQSCGGHVLNFLIQGYKRALPVYLPVYLVPALIVHREGLMNRMWTCLTARTFKKINIPLVALATSESSCSCPEKHILFEQFLAGLALAIEKKSRRIEISLYCLARGIESFFSCMTDLGYLPQSLNFKRADVIIFSISTAIIMHCYAQERETSSSCRIGGQSPSKQERLARDASPEEHGGIVEGTHDSLKPNSLRLYTLNKKKKKKKARSPPPGRTAREDAERLNSPIYLIVGLVRGKLLSMASSGDYLSQIDISNEEKDKLVAEVIRYIIFKTHQNSGCPIKREELTQIVTKNYRNRGLPAIVIEEAKEKLSSIFGYELRELQRARPSSTAQGHPPQHNVVDSKSYVLISKLPAEVYRKYVEDVDTAHVTECHFLLHNGTCQYTAESLWHHLRRMGLSENDEKHPVLGNIKQAVELLVQQRYLQKAKINGPEGNITFYELAERAIDGPVSEKIKEYVAQPLLYALRLIIIITNNQEYELTNNFFLHHIGWPILIRGLTIVSTLPPANLDDLKLRKDEYPCFTFVVHKMSNPKATRGSRMEISTAHHVVDAHRQHSYWHTRLLELASPIETVAKDLAHALAFMAPPCKLLLLQGSLKWLNN 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 693072 703860 + CmaCh12G001570.1 Cma12g00157 304647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00157 902 PANTHER UNCHARACTERIZED 11 455 IPR026749 -
Cma12g00157 902 MobiDBLite consensus disorder prediction 501 521 - -
Cma12g00157 902 MobiDBLite consensus disorder prediction 456 489 - -
Cma12g00157 902 MobiDBLite consensus disorder prediction 470 485 - -
Cma12g00157 902 Pfam MAGE homology domain 567 746 IPR002190 -
Cma12g00157 902 Gene3D MAGE homology domain, winged helix WH2 motif 674 763 IPR041899 -
Cma12g00157 902 Gene3D MAGE homology domain, winged helix WH1 motif 554 656 IPR041898 -
Cma12g00157 902 PANTHER BNAANNG02190D PROTEIN 11 455 - -
Cma12g00157 902 SMART MAGE_2 567 755 IPR002190 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00157 - - - csv:101202879 751.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00499 Cma12g00157 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00157 Cma-Chr12:693072 Cma15g01370 Cma-Chr15:8572297 7.62E-25 dispersed
Cma12g00157 Cma-Chr12:693072 Cma05g00499 Cma-Chr5:2366127 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g407 . . Bda01g00884 . . . . . Cmo05g00522 . . . . Car12g00145 . . Cpe07g00133 Bhi04g00756 . . . . . . Cla08g01107 Cam08g1560 Cec08g1134 Cco08g1260 Clacu08g1263 . Cre08g1044 Cone4ag1339 Cone7ag1591 Cone17ag1219 Cone20ag0505 . . . Cme03g01866 . Blo18g00132 . . Bpe02g01120 . Bma01g01404 . . . . Cma12g00157 Cma05g00499 Car05g00447 . . . . . . . . . . . . . . . . . Lsi08g00963 Csa02g02148 Chy03g01370 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007812 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00157 Cma_Chr12 FPKM 3.277475 3.236387 3.491595 3.135143 5.356744 4.903989 5.864841 4.828178 3.658821 3.960674