Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00163 ATGGGTTTCTTTCGATTTTCGAATTGGATTGTTTTTGTGGTTGTTTTTGGATTGATGAACATGTTCGGTTCTGGGTTTGGAGCTAGAAAGCTTGCTGCGTTGTATGAACCGCCGCCGGTGGCCATCGGTTACCATAATGGGGCGTTGCTTGACGGCGATGTTCCTGTTTCCATTTATTGGTATGGGAAGTTTACGGCGGCTCAGAAAGCTGTTCTTGTCGACTTTCTTCTGTCGTTGAATTCCAAGAGTGATGCCGGGGTCTGCAACGCTCCGCCCGTCTCTCGCTGGTGGAGTACCGTTCAGGTTTATATGAAAAGAGCCGGAAAGAAAGAGGCTCGGGTGATTTTAGCCAACCAAGTGACAGACGACAGCTACTCCATTGGGAAACTCCTAAAGAAGCTTCAAATTTCAGAGTTGTCAGGGAGGGCCGGCTCGAAACACGGCGGCGTGACACTGGTTCTCACGGCGGAGGACGTCGCCGTCGAAGGTTTCTGTATGAGCAGCTGCGGGTTTCACGATTGGGACCACAAATCAAAATCGTCTTTCGTATGGGTCGGCAACTCGGTGAGTCAATGTCCGGGTCAATGCGCCTGGCCTTTCCACCAGCCCATTTACGGCCCACAAACGCCGCCGCTCATACCGCCCAACGCCGACGTCGGACTCGATGGTATGATAATCAACATCGCCACTCTTTTGGCCGGAACCGCCACGAACCCATTCGGAGACGGCTACTATCTCGGGTCGCCGGCGGCGCCGCTGGAGGTGGCGACTGCCTGCCCCGGGGTGTACGGGAAAGGGGCTTATCCGGGATACGCTGGTGACCTACTGCAGGATGGCACCACCGGCAGCAGCTATAATGCCGTTGGCGTCGGAACTAGAAAGTACCTTTTGCCGGCGTTGTACGATCCTGTAACTGCTCGGTGTTCAACTCTGGTTTGA 939 54.31 MGFFRFSNWIVFVVVFGLMNMFGSGFGARKLAALYEPPPVAIGYHNGALLDGDVPVSIYWYGKFTAAQKAVLVDFLLSLNSKSDAGVCNAPPVSRWWSTVQVYMKRAGKKEARVILANQVTDDSYSIGKLLKKLQISELSGRAGSKHGGVTLVLTAEDVAVEGFCMSSCGFHDWDHKSKSSFVWVGNSVSQCPGQCAWPFHQPIYGPQTPPLIPPNADVGLDGMIINIATLLAGTATNPFGDGYYLGSPAAPLEVATACPGVYGKGAYPGYAGDLLQDGTTGSSYNAVGVGTRKYLLPALYDPVTARCSTLV 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 725377 726991 - CmaCh12G001630.1 Cma12g00163 304653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00163 312 Pfam Phosphate-induced protein 1 conserved region 43 311 IPR006766 -
Cma12g00163 312 PANTHER PROTEIN EXORDIUM-LIKE 5 13 312 IPR006766 -
Cma12g00163 312 PANTHER OS02G0756800 PROTEIN 13 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00163 - - - cmax:111496456 648.277
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01612 Cma12g00163 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00163 Cma-Chr12:725377 Cma16g00262 Cma-Chr16:1234319 1.17E-103 dispersed
Cma12g00163 Cma-Chr12:725377 Cma12g00164 Cma-Chr12:730059 6.05E-108 tandem
Cma01g01612 Cma-Chr1:11103533 Cma12g00163 Cma-Chr12:725377 5.33E-98 wgd
Cma12g00163 Cma-Chr12:725377 Cma05g00504 Cma-Chr5:2401008 3.86E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g430 . . . . . . . Bma01g02609 . Cmo12g00126 Cma01g01612 . . . Sed07g1190 . . Bhi04g00771 Tan02g2402 Cmetu07g0101 . Hepe10g0488 . Lcy13g1553 Cla08g01117 Cam08g1573 Cec08g1143 Cco08g1270 Clacu08g1274 . Cre08g1055 Cone4ag1329 Cone7ag1270 Cone17ag1212 . Lsi04g02242 Csa03g04453 . Cme03g01858 . . . . . Bpe14g00458 . . . . . Cma12g00163 . . . . . Bhi09g02445 Tan01g3797 Cmetu04g2098 . Hepe01g2134 Mch11g0672 . . . . . . . . Lsi08g00974 Csa02g02158 Chy03g01361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011849 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00163 Cma_Chr12 FPKM 35.135063 41.073483 0.970417 0.305778 2.652868 1.921373 2.742575 1.022685 1.076919 0.912472