Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00164 ATGGCGGCCTCGATGATCCAAATCCTTGCCTTTATTTCCTTTTTCCAAATCTCCATTGCTTCCAGGTTGCTTAATGAGTTCATTCCCGACCAGACCCAGTCGCTGAAATACCACAACGGCCCTCTTCTTTCCGGCAAGATCCGTATCAATCTCATATGGTATGGCAAATTCAAGCCGTCCCAGAAAGCAATCGTTAATGATTTCCTTACTTCCCTGTCGGATTCTTCCATTAAAGCCGCCGCGCCGTCGGTCGCCTCGTGGTGGAAGATGACGGCGAAGTACTACGAACATTCCGGCAGGAAATCAGCTCCTCTGTTTTTGTCGATCGGAAAGCAAGTTCTCGATGAGAATTACTCGTTGGGGAAATCGCTCACCAACAAAAAAATCGTTCAATTAGCTTCAAAGGGTGAGCAAAAAAACGCGATTAATGTCGTTTTGACGGCGCCGGATGTCACCGTCGATGGATTCTGTATGAGCCGCTGCGGCACTCATGGCTCTGCCCCCGCCGCCGTCGGAGTTAAAGGGAAAAACTACAAATTCGCTTACATCTGGGTTGGAAATTCCGAAACCCAATGTCCCGGGCAGTGCGCGTGGCCATTCCATCAGCCGATTTACGGCCCGCAATCGCCGCCTCTTATTGCGCCGAACGGCGATGTGGGTATGGACGGAATGATTATAAACCTTGCCAGTCTCTTGGCCGGAACCGTCACGAACCCATTTGGAAATGGATACTTTCAAGGTCCGGCGACGATGCCATTGGAGGCTGCCTCGGCCTGCACTGGTATCTATGCCAAAGGGGCTTATCCTGGTTACGCCGGCGATTTGTTGACGGATTCCACCACCGGCGGGAGCTATAATGCTAACGGCGGTAACGGAAGGAAATACTTGCTGCCGGCGTTGCTGGACCCTTCTACTTCGGCTTGTTCAACTCTGCTCTGTTATATATCTCATTAA 954 51.05 MAASMIQILAFISFFQISIASRLLNEFIPDQTQSLKYHNGPLLSGKIRINLIWYGKFKPSQKAIVNDFLTSLSDSSIKAAAPSVASWWKMTAKYYEHSGRKSAPLFLSIGKQVLDENYSLGKSLTNKKIVQLASKGEQKNAINVVLTAPDVTVDGFCMSRCGTHGSAPAAVGVKGKNYKFAYIWVGNSETQCPGQCAWPFHQPIYGPQSPPLIAPNGDVGMDGMIINLASLLAGTVTNPFGNGYFQGPATMPLEAASACTGIYAKGAYPGYAGDLLTDSTTGGSYNANGGNGRKYLLPALLDPSTSACSTLLCYISH 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 730059 731078 + CmaCh12G001640.1 Cma12g00164 304654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00164 317 Pfam Phosphate-induced protein 1 conserved region 35 311 IPR006766 -
Cma12g00164 317 PANTHER PROTEIN EXORDIUM-RELATED 4 311 - -
Cma12g00164 317 PANTHER PROTEIN EXORDIUM-LIKE 5 4 311 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00164 - - - csv:101221106 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01612 Cma-Chr1:11103533 Cma12g00164 Cma-Chr12:730059 3.43E-132 dispersed
Cma05g00504 Cma-Chr5:2401008 Cma12g00164 Cma-Chr12:730059 9.51E-173 dispersed
Cma12g00164 Cma-Chr12:730059 Cma16g00262 Cma-Chr16:1234319 6.74E-126 dispersed
Cma12g00163 Cma-Chr12:725377 Cma12g00164 Cma-Chr12:730059 6.05E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00164 Cma_Chr12 FPKM 86.747383 98.405113 22.720053 26.011293 22.085367 19.650076 22.11969 67.713524 66.244751 66.828629