Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00165 ATGGCTCTCTCTAGCAGTTCTCTTGTTCCGATCAATTCTTCTGTAAGGAATCGGAGCCCTTTCCCTTCCTCTAAGCCTCGCCATTGTTCTCTCAACTTCGATGATCGAAAGTACCTGCGGATCATCGCCCAGGCTTCTGAGTCTGCCAAGAATCCGGCGGTTTCCGATCCACCGGTGGAGAAGAAATCGGTTCCGCCGTCTGTATCGGCTGCTACGAACTCGACGGTGAAGCCGGCTCAGAAGTTGGGCTCTGAGAAATGGACTCCCGACAGTTGGAAATCGAAGAAAGCTCAACAGCTTCCCGAGTATCCGAATCAGGAGGAGCTTCAATCGGTGCTTCATACGCTGGAAGCGTTTCCCCCACTCGTATTCGCCGGAGAGGCGAGGAGCCTGGAGGAGCGTCTGGCGGAGGCGGCGATGGGGAATGCTTTCCTTCTACAGGGTGGGGATTGTGCTGAAAGCTTTAAGGAATTTAATGGTAATAACATTCGTGATACCTTTCGGATTATTCTTCAAATGGGCGCTGTTCTGATGTTTGGAGGACAAATGCCAGTCATTAAGGTTGGTAGAATGGCCGGCCAGTTTGCGAAGCCTAGGTCAGACCCGTTCGAAGAGAAAGACGGTGTAAAGCTGCCGAGTTACAGGGGAGATAATATCAACGGGGATGCTTTTGATGAGAAGTCGAGGATTCCAGATCCTCAAAGGTTGATCCGAGCCTACTGTCAATCGGCGGCGACTCTGAATCTTTTAAGGGCTTTCGCCACCGGTGGGTATGCAGCCATGCAGAGGGTCACACAGTGGAACTTGGATTTTGCAGAGCACAGCGAGCAAGGAGATAGATACCAGGAACTCGCCCACCGAGTCGATGAGGCCCTTGGATTCATGGCCGCTGCTGGGCTTACTATTGATCATCCTATCATGACTGCTACTGATTTCTGGACATCTCATGAATGCTTACTCTTGCCATATGAGCAGTCACTTACTCGGTTGGATTCGACTTCTGGTCTTTACTATGATTGTTCTGCTCATATGCTTTGGGTGGGTGAACGAACCAGGCAGTTGGATGGTGCTCATGTTGAATTTTTAAGAGGGGTTGCCAATCCTCTAGGAATTAAAGTAAGTGATAAGATGGATCCAAGCGAGCTAGTTAGGCTCATTGAAATTTTGAATCCTCAAAACAAGCCAGGGAGGATTACAGTGATCACCAGAATGGGAGCTGAGAATATGAGAGTGAAGCTTCCGCATCTGATCCGAGCTGTTCGCAGGTCTGGTCAAGTTGTCACCTGGGTTTCCGATCCTATGCACGGGAACACTATCAAAGCCCCCTGTGGACTCAAGACTCGCCCCTTCGACTCTATCAGGGCCGAGGTTAGAGCATTCTTCGATGTGCACGAGCAAGAGGGCAGCTACGCTGGGGGAGTTCATTTGGAGATGACTGGGCAGAATGTGACAGAATGCATTGGTGGATCGAGAACTGTAACATTTGACGATCTGAGCTCACGCTACCACACCCACTGTGATCCTAGGCTCAATGCTTCCCAATCTCTCGAACTCGCCTTCATTATCGCGGAGCGCTTTAGAAAGAGGAGGATCAAGTTGCAGAGTTCTCTTCCCTCTTCTGGCCTGTAA 1629 50.34 MALSSSSLVPINSSVRNRSPFPSSKPRHCSLNFDDRKYLRIIAQASESAKNPAVSDPPVEKKSVPPSVSAATNSTVKPAQKLGSEKWTPDSWKSKKAQQLPEYPNQEELQSVLHTLEAFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNGNNIRDTFRIILQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRIPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTIDHPIMTATDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPSELVRLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRSGQVVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSYAGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERFRKRRIKLQSSLPSSGL 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 733323 737251 + CmaCh12G001650.1 Cma12g00165 304655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00165 542 SUPERFAMILY Aldolase 79 527 - -
Cma12g00165 542 MobiDBLite consensus disorder prediction 1 30 - -
Cma12g00165 542 MobiDBLite consensus disorder prediction 47 102 - -
Cma12g00165 542 MobiDBLite consensus disorder prediction 66 81 - -
Cma12g00165 542 Gene3D Aldolase class I 268 528 IPR013785 -
Cma12g00165 542 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1 537 - -
Cma12g00165 542 MobiDBLite consensus disorder prediction 1 26 - -
Cma12g00165 542 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 87 530 IPR002480 GO:0003849|GO:0009073
Cma12g00165 542 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 1 537 IPR002480 GO:0003849|GO:0009073
Cma12g00165 542 Pfam Class-II DAHP synthetase family 87 523 IPR002480 GO:0003849|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00165 K01626 E2.5.1.54, aroF, aroG, aroH; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] - csv:101220636 992.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00818 Cma-Chr6:4393698 Cma12g00165 Cma-Chr12:733323 0 dispersed
Cma07g00552 Cma-Chr7:2374470 Cma12g00165 Cma-Chr12:733323 0 dispersed
Cma11g01656 Cma-Chr11:10903129 Cma12g00165 Cma-Chr12:733323 0 dispersed
Cma12g00165 Cma-Chr12:733323 Cma16g01103 Cma-Chr16:8488208 0 dispersed
Cma12g00165 Cma-Chr12:733323 Cma03g00815 Cma-Chr3:6212177 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g436 . Blo12g00710 . Bda03g00487 Bpe02g00116 Bpe04g00441 . Bma01g02607 . Cmo12g00127 . . . Car12g00152 Sed14g1024 . Cpe07g00140 Bhi04g00773 Tan02g2405 Cmetu03g1046 . Hepe10g0485 . Lcy13g1551 Cla08g01120 Cam08g1576 Cec08g1146 Cco08g1273 Clacu08g1277 . Cre08g1058 Cone4ag1327 Cone7ag1268 . . . . . Cme03g01855 . . Bda11g00773 . . . . . . . . Cma12g00165 . . . . . . . . . . . . . . . . . . . Lsi08g00976 Csa02g02160 Chy03g01357 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000443 4 4 4 4 4 4 5 4 4 4 4 3 5 4 3 4 4 5 5 4 4 3 4 4 3 4 3 5 4 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00165 Cma_Chr12 FPKM 145.653152 160.522873 115.30349 112.189072 53.565239 50.68618 50.096684 40.026588 38.823345 37.998837