Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00167 ATGGCTACCGCCCCCTCTCTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCGGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCTATCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCTCGTAGGGCCTCTTGGCGTATTATTTCCTCTATCGAGCAGAAGGAGGAGAGCCGAGGTAATGATCACCATGTCTCTGTGATCCGTGACTACAGATCCAAAATCGAGAGCGAACTCTCTAATATCTGCGATGGAATTCTCAAACTCCTCGATTCCAGACTTATTCCCTCCGCGGCCTCCGGAGATTCCAAGGTATTTTACCTTAAAATGAAAGGCGATTACCATAGATACCTGGCTGAATTCAAAACCGGTGCCGAACGGAAGGAAGCTGCCGAAAGTACCCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCCGAGTTGCCTCCCACGCATCCGATCCGACTTGGATTGGCTCTCAACTTCTCTGTATTCTACTATGAAATTTTGAATTCCCCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCCATCGCTGAGTTGGATACCCTCGGTGAGGAATCCTACAAGGATAGTACTTTGATTATGCAACTTCTCCGCGATAACCTCACTCTCTGGACCTCGGACATGCAGGACGAGGGTGCGGATGAGATCAAAGAAGCTCCCCCCAAGCGCGAGGAAGAAAAGCAGTAA 786 51.02 MATAPSLREENVYMAKLAEQAERYEEMVEFMEKVSASIDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDHHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDEGADEIKEAPPKREEEKQ 261
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 742588 744758 + CmaCh12G001670.1 Cma12g00167 304657
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00167 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cma12g00167 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cma12g00167 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cma12g00167 261 MobiDBLite consensus disorder prediction 242 261 - -
Cma12g00167 261 Gene3D - 2 251 IPR036815 -
Cma12g00167 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Cma12g00167 261 Coils Coil 7 34 - -
Cma12g00167 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cma12g00167 261 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 253 - -
Cma12g00167 261 SMART 1433_4 8 251 IPR023410 -
Cma12g00167 261 MobiDBLite consensus disorder prediction 243 261 - -
Cma12g00167 261 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Cma12g00167 261 PIRSF 14-3-3 2 250 IPR000308 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma01g01616 Cma12g00167 CCT
Cma09g00568 Cma12g00167 CCT
Cma05g00507 Cma12g00167 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00442 Cma-Chr1:2223792 Cma12g00167 Cma-Chr12:742588 6.93E-162 dispersed
Cma12g00167 Cma-Chr12:742588 Cma14g01134 Cma-Chr14:8781087 1.60E-162 dispersed
Cma01g01616 Cma-Chr1:11112714 Cma12g00167 Cma-Chr12:742588 8.62E-176 wgd
Cma12g00167 Cma-Chr12:742588 Cma05g00507 Cma-Chr5:2430586 0 wgd
Cma12g00167 Cma-Chr12:742588 Cma09g00568 Cma-Chr9:2573521 6.07E-176 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00167 K06630 - csv:101220164 498.049