Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00174 ATGGAGCTCGACGAACACGGCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAGGCAAATTGGGACGCCATTCCAACTGAAATGGCCGATCTCAATGCTTGGGCGTTCGATTACTGTTTTGATCACAACATTTCCAATTTCAACCCAAATTCTTCATCGGAACCTCTATCCACTCAGAATCTGGACGAATTTTATCATCCTTTGGCAAACGAGTTCTCAGCTCCACAAATGGCCGATTCCGCCTACGCCGCCATGGAAGTAGCTGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGGGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTAGCAAACGAGATTCAGAACATGGAGGCGGTTCAAGTTCAATCGGCTTGCAAAGCGGAGCCGATTCAGTCTCCAGAACTCCCCGTTTTCAACATCGGAACATGCTCTCTCGAACGAAAGAACGGACCGAAGAAATTACAAGGCCAACCGTCGAAGAATCTGATGGCTGAAAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTTCCTAAGATCAGCAAGATGGATCGAACTGCGATTCTAGCAGATGCAATAGATTACATGAAAGAATTGCTGGAGAAGATCGGAAGTCTGCAAAGAGAAATGGATCGAACAAATCAAACGACTAGGAATTCATTCCACGACACAAAACCGAGCGAATTAGTAGTGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGAAACACGAGGATCGAGATTTACTGTGCGGCGAAGCCAGGATTACTGTTATCGACGGTGAATACGATCGAAGCATTAGGGCTTGAGATTCAACACTGTGTAATCAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTCAGGAACTGAAGCCTGAGGAATTGAAGGAAGCTTTATTTAGAAATGCAGGCTATGGAGGAAGCTGCTTGTAG 972 46.4 MELDEHGFLEELMALRREANWDAIPTEMADLNAWAFDYCFDHNISNFNPNSSSEPLSTQNLDEFYHPLANEFSAPQMADSAYAAMEVAAPLPFQAERPNVEGEEEEEELGFLANEIQNMEAVQVQSACKAEPIQSPELPVFNIGTCSLERKNGPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYMKELLEKIGSLQREMDRTNQTTRNSFHDTKPSELVVRNSPKFEVESRNGNTRIEIYCAAKPGLLLSTVNTIEALGLEIQHCVISCFNDFALQATCSQELKPEELKEALFRNAGYGGSCL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 791251 792943 - CmaCh12G001740.1 Cma12g00174 304664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00174 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 323 - -
Cma12g00174 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 225 IPR036638 GO:0046983
Cma12g00174 323 Coils Coil 102 122 - -
Cma12g00174 323 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Cma12g00174 323 Gene3D - 155 225 IPR036638 GO:0046983
Cma12g00174 323 CDD ACT_UUR-ACR-like 255 296 - -
Cma12g00174 323 PANTHER - 2 323 - -
Cma12g00174 323 SMART finulus 165 214 IPR011598 GO:0046983
Cma12g00174 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Cma12g00174 323 Coils Coil 198 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00606 Cma-Chr9:2852285 Cma12g00174 Cma-Chr12:791251 5.71E-94 dispersed
Cma12g00174 Cma-Chr12:791251 Cma14g00762 Cma-Chr14:3798446 3.29E-44 dispersed
Cma12g00174 Cma-Chr12:791251 Cma03g00858 Cma-Chr3:6395689 8.53E-81 wgd
Cma12g00174 Cma-Chr12:791251 Cma05g00563 Cma-Chr5:2765253 0 wgd
Cma12g00174 Cma-Chr12:791251 Cma07g00592 Cma-Chr7:2545979 9.41E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35957 PF00010 HLH 6.20E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00174 - - csv:101221329 468.388