Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00176 ATGGTGGTTAGAAAAGTCGGAAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACGTTTGCGAAGGTGAAGTTCGCTCAGAATACTGAGACTGGCGGGAGTGTTGCTATGAAAGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTTGAACAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCTTGCAAGCCGTACGAAGATTTATATAATCTTGGAGTACATTACCGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGCCTAAGTGAAGCTGAATCTAGGAGATATTTCCAACAGCTAATCGATGGTGTAGATTATTGCCACAGCAAGGGAGTATATCACAGAGATTTAAAGCCTGAAAATCTGCTACTTGACTCGCTAGGTAATCTAAAGATCTCAGATTTTGGCCTGAGTGCATTGCCCGAACAGGGAGTTAGCCTACTCCGTACGACATGCGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGGGCTATGGCAGATGTTTGGTCCTGTGGGGGTATCTTCCATTTGATGAGCTTGACCTCACCACGTTATATAATTGAGAGAGCCGACTTTTCATGTCCATCTTGGTTTCCTGTGGGGGCAAAAGCCTTGATCCATAGAATATTTGACCCCAATCCTTCAACTATCAGAGAGGACGAGTGGTTCATGAAAAATTATGTTTTGGTCAAACATTTCGAAGATGAAGATGTAAATCTGGATGACGTAAATGCCGTCTTCGATGATCCTGAGGAACAAAGGACCGAAGAAGAACGTGGTAACGAGGACATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTGAACCTCGGAACGATGTTTGACCGTGGCCAGGATACTATGAAGTACCCGACACGCTTCGTCTGCCAAAAGCCCGCAAAGGTTTTATTATCAACTATGGAAGTTGTAGCTCAATCAATGGGTTTCAAGACGCACATTCGCAATTACAAGATGAGAGTAGAAGTCCCATCAGCAAGCAAGACTTCTTATTTCTCAGTTATTATGGAAATTTTCGAAGTCGCTCCCACGTTCTTTATGGTGGACATTCAGAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGACATCATCTGGAAACCTTCAATCGACACCAGCAAATCAAGGACCGCCAAGAACAAGACTAAAAAACGCTGA 1278 43.82 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGGSVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGGIFHLMSLTSPRYIIERADFSCPSWFPVGAKALIHRIFDPNPSTIREDEWFMKNYVLVKHFEDEDVNLDDVNAVFDDPEEQRTEEERGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDTMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEVPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSNLEDIIWKPSIDTSKSRTAKNKTKKR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 803794 809502 + CmaCh12G001760.1 Cma12g00176 304666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00176 425 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 422 - -
Cma12g00176 425 PANTHER - 2 422 - -
Cma12g00176 425 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Cma12g00176 425 SUPERFAMILY Protein kinase-like (PK-like) 6 242 IPR011009 -
Cma12g00176 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cma12g00176 425 Gene3D Transferase(Phosphotransferase) domain 1 3 285 - -
Cma12g00176 425 ProSiteProfiles NAF domain profile. 282 306 IPR018451 GO:0007165
Cma12g00176 425 Pfam Protein kinase domain 9 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00176 425 SMART serkin_6 9 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00176 425 Gene3D Kinase associated domain 1, KA1 286 407 - -
Cma12g00176 425 Pfam NAF domain 284 342 IPR004041 GO:0007165
Cma12g00176 425 CDD CIPK_C 288 403 - -
Cma12g00176 425 ProSiteProfiles Protein kinase domain profile. 9 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00544 Cma-Chr10:2500684 Cma12g00176 Cma-Chr12:803794 0 dispersed
Cma12g00176 Cma-Chr12:803794 Cma13g00516 Cma-Chr13:5462466 8.38E-159 dispersed
Cma12g00176 Cma-Chr12:803794 Cma05g00561 Cma-Chr5:2752550 9.47E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68939 PF00069 Pkinase 6.70E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00176 - - csv:101222107 750.74