Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00180 ATGTTTCTAAGAAGAGTCACCGTCGGTGCTACGAAACTCAATGTTGCTCCGGCGAATGGGCGGTTCCTCCTCCGTCACATGTCTTCTCGGTACGGGTCCACGGCGGAGGAAAGAGAGGCTCGAGCTACTTGGATTAAGCAGCTGAACGACCCCATGGAGGTCGTTGCTCCGGAAGTGGTAGACATCATTGAGCTTGAGAAAGCTCGTCAATTCAAGGGTCTTGAAGTTATAGCGTCAGAGAATTTCTGCTCAAGAGCAGTGATGGAAGCAATTGGTTCGATTATGACCAATTCATCAAGTGATGGATATCCCGGTGCCAGATACAGTGGAGGAACTGAGTACTTGGACATCATTGAAAACTGGTGCATGGAACGTGCTCTAGAAGTTTTTCGTTTGGACCCTGCAAAATGGGGAGTTAACGTGCAGACTCTGACTGGATCCATAGCTAACTTTCAGACATATACTGGATTATTAAAACCTCATGACAGGATAATGTCTCTTGATTTACCACATGGTGGACATCTTTCTCATGGTTATCAGACGGCTACCAAGAAAGTTTCTGCTGTTTCATTATTCTTCGAGACAATGCATTATAGGTTGGATGAGAAAACTGGTTACATTGACTATGATGGGATGGAGAGAAGTGCATCTTTGTTTCGACCAAAACTCATTATTGCTGGTGCAAGTGCCTATGCTCGACTGTTTGATTATGCACGAATTCGAAAGATCTGTGACGAACATAAGGCAATCATGATGGCAGACATGGCACATCTTGCTGGTTTAGTTGCAGCCGACGTTATTCCATCTCCTTTTGAGTATGCTGATATTGTGACAACAACCACAAATAAATCCTTACGTGGACCACGAGGAGCTATGATTTTCTTCCGAAAGGGCGTTAAAGAGATCAACAAAAAAGGAGAGGAAGTGCTCTATGACTATGAAGACAAAATTAATAACGCTGTCTTTCCTGGTGTTCAAGGTGCCTCACACAACCAAAAACTAGCCGGTCTGGCGATTTCACTAAAACAGGCAATGACTCCGGAATACAAAGCCTACCAACAGCAGGTTCTCAGGAATTCTTCAAAACTTGCTCAGTGTTTGATTGAGAAGGGGTATGAACTTGTATCTGGTGGAACTGATAATCATTTAGTCCTTATAGATTTGAAAAATAAGGGTATTGATGGGTCAAGAGTTGAGAAGGTTTTGGAATGGGTTCGTATTGCATCTAACAAGAACACAGTTCCAGGGGATGTATCTGCCGTGATTCCTGGTGGCATCCGCTTGGGAACTCCTGCTTTGACATCGAGAGGCTTACTCGAAGCAGATTTTGCTCAAGTAGCTGAATTTTTTGATGAAGGTTTGAAGTTGGCCTTGAAGATTAAGGCTGCTGAACCTAAAGGCGCTAAGTTTAAGGATTTCGAGAAAACCATGAAATCAAATAAAGAATTTCAATCTGAAATTTCAAAGCTCCGACGCGAGGTTGAGGAGTTTGCCATGCAGTTCCCAACAATAGGCTGTGATAAAGAGACAATGAAATATTGA 1542 43.26 MFLRRVTVGATKLNVAPANGRFLLRHMSSRYGSTAEEREARATWIKQLNDPMEVVAPEVVDIIELEKARQFKGLEVIASENFCSRAVMEAIGSIMTNSSSDGYPGARYSGGTEYLDIIENWCMERALEVFRLDPAKWGVNVQTLTGSIANFQTYTGLLKPHDRIMSLDLPHGGHLSHGYQTATKKVSAVSLFFETMHYRLDEKTGYIDYDGMERSASLFRPKLIIAGASAYARLFDYARIRKICDEHKAIMMADMAHLAGLVAADVIPSPFEYADIVTTTTNKSLRGPRGAMIFFRKGVKEINKKGEEVLYDYEDKINNAVFPGVQGASHNQKLAGLAISLKQAMTPEYKAYQQQVLRNSSKLAQCLIEKGYELVSGGTDNHLVLIDLKNKGIDGSRVEKVLEWVRIASNKNTVPGDVSAVIPGGIRLGTPALTSRGLLEADFAQVAEFFDEGLKLALKIKAAEPKGAKFKDFEKTMKSNKEFQSEISKLRREVEEFAMQFPTIGCDKETMKY 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 820599 826265 - CmaCh12G001800.1 Cma12g00180 304670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00180 513 PIRSF SHMT 33 510 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cma12g00180 513 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 16 513 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cma12g00180 513 Coils Coil 473 500 - -
Cma12g00180 513 Gene3D - 81 354 IPR015421 GO:0003824
Cma12g00180 513 Gene3D Aspartate Aminotransferase, domain 1 57 502 IPR015422 GO:0003824
Cma12g00180 513 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 16 513 - -
Cma12g00180 513 SUPERFAMILY PLP-dependent transferases 44 505 IPR015424 -
Cma12g00180 513 Hamap Serine hydroxymethyltransferase [glyA]. 51 505 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cma12g00180 513 Pfam Serine hydroxymethyltransferase 55 449 IPR039429 -
Cma12g00180 513 CDD SHMT 55 473 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00180 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - csv:101222345 785.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00180 Cma-Chr12:820599 Cma12g00183 Cma-Chr12:838635 0 dispersed
Cma12g00178 Cma-Chr12:812991 Cma12g00180 Cma-Chr12:820599 1.66E-74 proximal
Cma12g00180 Cma-Chr12:820599 Cma12g00182 Cma-Chr12:832220 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g58 . . . . . . . . . . . . . . Sed07g1476 Cpe07g00154 . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00180 . . . . . . . . . . . Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . Csa02g02227 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00180 Cma_Chr12 FPKM 137.035248 148.260925 260.902039 265.905548 16.68943 15.36841 14.298274 10.277425 8.830357 9.196445