Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00185 ATGGCCGCCTCCGTGCCGGACAATCTCTCTCGCGAGCAATATGTGTATCTAGCTAAGCTTGCCGAGCAGGCTGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCCGAGCTCTCTGTCGAGGAGCGAAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGCTCACTTCGAGCTGCTTGGCGGATTGTCTCTTCTATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCCGAGCTTTCCGAGGTCTGTGCTAGTATTTTGAAGCTTTTGGACTCGAATCTAATTCCATCGGCATGTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATAGGTATATGGCGGAGTTTAAGGCTGGGGATGAGAGGAAAGCTGCTGCTGAGGATGCTATGCTGGCTTATAGGGATGCTCTGGATGTCGCAGTTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGTCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGCATTTGAGGAAGCCATCGCTGAGCTGGACACTTTGGGTGAAGAATCATACAAGGACAGCACCCTCATCATGCAGCTGTTGAGGGACAACCTCACGCTCTGGACTTCAGATGCGCAGCTGGGGCCAGCTTTGGGTCAGAACCACATGAACCAACTGTTTGTTCCTATTTTTTTAGAACTGTTGGTGGATTCGGTTTTATTGATATTGATAGGGGAATTGCAAAAGGTAGCAAAATACAAATGGTTGGTGAATTGA 876 47.49 MAASVPDNLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEVCASILKLLDSNLIPSACASESKVFYLKMKGDYHRYMAEFKAGDERKAAAEDAMLAYRDALDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQLGPALGQNHMNQLFVPIFLELLVDSVLLILIGELQKVAKYKWLVN 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 848110 852167 - CmaCh12G001850.1 Cma12g00185 304675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00185 291 Gene3D - 2 250 IPR036815 -
Cma12g00185 291 Coils Coil 17 37 - -
Cma12g00185 291 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Cma12g00185 291 SMART 1433_4 11 255 IPR023410 -
Cma12g00185 291 PIRSF 14-3-3 7 252 IPR000308 -
Cma12g00185 291 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Cma12g00185 291 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Cma12g00185 291 PANTHER 14-3-3 PROTEIN 8 257 IPR000308 -
Cma12g00185 291 PANTHER BNAC02G00320D PROTEIN 8 257 - -
Cma12g00185 291 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
Cma12g00185 291 Pfam 14-3-3 protein 17 242 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00185 Cma-Chr12:848110 Cma14g01134 Cma-Chr14:8781087 1.63E-131 dispersed
Cma12g00185 Cma-Chr12:848110 Cma05g00559 Cma-Chr5:2740473 8.37E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00185 K06630 - csv:101222827 448.743