Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00186 ATGTGGAACGATTGCCGTGGCGGTTTACCGGGCGCCGACCAGCCACAATTCGATCAAGAATCGTTTATTAACTTTGATTTCTTCTCGGCCACGACTAAACCTAAGGACTATTACAAGACGTTGGAGGTGGATTACGATGCAACCGATGATGATATTCGAGCCAATTACATACGACTGGCTCTGAAATGGCATCCTGACAAGCAGAAAGATCAGGATAATTCCACTTCAAGATTTCAGGAAATAAACGAGGCTTATCAAGTTTTGAGTGATCCCATCAAGAGGAGAGAATACGACATCAAAGACATGCTGTACAAATATGATTACAACGTAGTTGAATATCTCAACCGTTTCAAAGGGCTTATATTGACTTGCAATGGCCTTGGAATTAAGCATTCAATTTGGTAA 405 41.48 MWNDCRGGLPGADQPQFDQESFINFDFFSATTKPKDYYKTLEVDYDATDDDIRANYIRLALKWHPDKQKDQDNSTSRFQEINEAYQVLSDPIKRREYDIKDMLYKYDYNVVEYLNRFKGLILTCNGLGIKHSIW 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 853134 858211 - CmaCh12G001860.1 Cma12g00186 304676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00186 134 CDD DnaJ 36 90 IPR001623 -
Cma12g00186 134 ProSiteProfiles dnaJ domain profile. 36 101 IPR001623 -
Cma12g00186 134 Gene3D DnaJ domain 27 113 IPR036869 -
Cma12g00186 134 Pfam DnaJ domain 36 98 IPR001623 -
Cma12g00186 134 SUPERFAMILY Chaperone J-domain 32 120 IPR036869 -
Cma12g00186 134 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 134 - -
Cma12g00186 134 SMART dnaj_3 35 93 IPR001623 -
Cma12g00186 134 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Cma12g00186 134 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 134 - -
Cma12g00186 134 PRINTS DnaJ domain signature 38 56 IPR001623 -
Cma12g00186 134 PRINTS DnaJ domain signature 56 71 IPR001623 -
Cma12g00186 134 PRINTS DnaJ domain signature 73 93 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00186 - - - cpep:111805007 248.054
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01638 Cma12g00186 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00186 Cma-Chr12:853134 Cma03g01288 Cma-Chr3:8367726 1.31E-16 dispersed
Cma19g00267 Cma-Chr19:1910701 Cma12g00186 Cma-Chr12:853134 2.89E-13 dispersed
Cma01g01638 Cma-Chr1:11229337 Cma12g00186 Cma-Chr12:853134 1.74E-64 wgd
Cma12g00186 Cma-Chr12:853134 Cma05g00558 Cma-Chr5:2736191 5.81E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00186 Cma_Chr12 FPKM 8.22359 9.074541 9.285697 10.46432 9.856326 8.293945 7.902633 7.672092 7.332946 8.670192