Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00190 ATGACTAACCGAAACGCCGAGCCTTTTCAGGGAGAATCCGACTCTCCTCCGCCGCCGCCACCTCCTCCTCCGCAGGATCCTGCTGATGGTTCTTGTGCTGGAAACACGGTTTTCAAGAGTGGGCCACTTTTCCTATCATCAAAAGGGATTGGATGGACGTCCTGGAAAAAGAGATGGTTCATCCTAACACGTACTTCACTGGTTTTTTTTCGAAGTGATCCAAATGCTGTTCCTCAGAAAGGGGGTGAGGCGAATTTGACTCTCGGTGGCATTGATCTCAACAATTCAGGCAGTGTTGTTGTGAAAAGTGAAAAAAAACTCTTGACCGTGCTCTTTCCTGATGGTCGAGAAGGACGTGCATTCACACTCAAGGCTGAAACATTGGAGGATCTCTATGAATGGAAAGCCGCACTGGAAAATGCTTTGGCACAGGCACCCAGTAGTGCCAATGCTAATGGTATCTTGAAGAATGATAAGATGGAACCAAATAATGGGTCTTCAGAGACGTTGAAAGATGGCCAACCACAACCTGGAAGACCCAGAGTCCTTGGTAGGCCAATTTTGCTTGCTTTGGAAGATGTTGATGGAACTCCCTCTTTTCTGGAGAAAGCCCTTAGATTTATAGAAACCCATGGAGTCAAAGTAGAAGGCATTTTGCGACAAGCTGCAGATGTTGATGATGTTGAACATCGTCTGCGGGGATATGAGCAGGGAAAAATCGAGTTTTCTCCAGAAGAAGATGCACATGTAGTGGGTGACTGCGTGAAGTATGTCATCCGGGAGTTACCATCATCTCCAGTTCCAGCATCTTGCTGTAACGCTTTATTAGAAGCAAGCAAAACTGAACGAGGTGGCAGAGTCAATGCTATGCGATCTGCAATATATGAAACCTTTCCAGAACCAAATCGCCGTTTACTGCAGAGAATTCTTATGATGATGCAAGCTGTGGCTTCTCATAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGGCAGCTTGCATGGCCCCCTTACTCCTTCGTCCTCTTTTAGCTGGTGAATGTGAAATTGAAACTGATTTTGACGTGGGGGGTGATGGTTCCATTCAACTTCTTCGTGCAGCTGCCGCAGCAAACCATGCTCAAGCCATAGTTATTACTCTACTGGAGGAGTATGGCAAAATTTTTGGGGAAGGTTCTATGTCCCCTATATTATACTCCGATTCAGAAGAGAGTGGAAGTGAGAGCGAGGAGGCAAGTGATGATGATATGTCTTATGATGATGAAGAACAAGATGATGCTACTGGTTCTGATGTGGCAACAGACGATGAGCTTGAATCAGCTGGAACCTGTAGTGGGAGTGTCGGCTCTGGGGAGCATGATTTATATGATGATAAGGGTTCTGACGTATTGAGTACTAGTTCGAAGAATTCCGATATGTGTGATGTAAATGGAATGAAGCCAAAGTCATCAAAGGAGAGAATCCATGACAAAATTGATCGAGGTAGAGGTAATTCACCAATTAAGGATGAGAAGTCCTGTGAAGTTGAATGTGCATCCGAAAGCTTTGAAGGTTCTCCAACTACATCTAATAAAAGTTCCAACACGACAAAGCGTCTCACCATTTGGGGACGCACGCCTGCAAAGAAGAAACTCTCCTTGGAATCCATTGATTATGATTTCGGCGAAGAGGTTGAGATTCAGAGACTTGAGGCCACTAAATGTGAACTGCAAAATAAAATCGTGGAGGCGGCGCGAGAAAATGCGGTTCTCCAATCCAGCTTGGAAAACCGAAAGAAGATCTTGCAAGAGCGTCGTCTAACTCTTGAGCAAGAAGTAGCAAGATTAAGAGAACAGTTGCAAAGGGAGAAAGATCCCTCAGCTAATATTAGTGAAAAGACAAAGGCAGATCTTGGAGAAAGCAATCGAGGCGAGAAAGACACTGCCAATATAAACAACACGATGGATGAATTTGTAGGACTGCTTAATAGGATACGTGATCAGAAAAGTAACCTACCTGATTTACGTAATGTCTCCCAACAAATGCAGAATCATCAAACAAAATTGAAGGACAAGAGGAAGGATGCTGGAAGTTTAGCCCCTTCGCATCCTGAACACTCCAGAAATAAGGATGTTCTTTCCGGTCATGCAGAAATAAGTAAACATTCCCCTCTGCACCAGCATCTAGATCCTCATAATCCCAGTGCCAAAATAGGTGTATTGGCAACCAATTTCGCAACGGGTCTAACTAATCCTAAGAGGACTGGTGCGAGGATGGAGCTGGGACCAAATCACAATTCTTCAGCACTGACGAAACTGACGACCAGACTCAACTTCTTGAAGGAGCGTCGCAGCCAGATAGCAAATGAACTCCAGAATATGGACCGGGGACGAGTTTCGGGCCAATCAATCGACGGTTCTGAAAAGGGCAGGGGAGTTGAAGCTCAGCGCTCAGTCCAAAACTCAGATGATACTAAAGGGTCTGCTGACAATCTCCAATCCATTCAGGACTCCGATAAGCGAGCGGGAAGCCAAGGCAGCCAGCCCCAAAAATCAGATGCCAGATAA 2544 45.4 MTNRNAEPFQGESDSPPPPPPPPPQDPADGSCAGNTVFKSGPLFLSSKGIGWTSWKKRWFILTRTSLVFFRSDPNAVPQKGGEANLTLGGIDLNNSGSVVVKSEKKLLTVLFPDGREGRAFTLKAETLEDLYEWKAALENALAQAPSSANANGILKNDKMEPNNGSSETLKDGQPQPGRPRVLGRPILLALEDVDGTPSFLEKALRFIETHGVKVEGILRQAADVDDVEHRLRGYEQGKIEFSPEEDAHVVGDCVKYVIRELPSSPVPASCCNALLEASKTERGGRVNAMRSAIYETFPEPNRRLLQRILMMMQAVASHKAENRMSSSAVAACMAPLLLRPLLAGECEIETDFDVGGDGSIQLLRAAAAANHAQAIVITLLEEYGKIFGEGSMSPILYSDSEESGSESEEASDDDMSYDDEEQDDATGSDVATDDELESAGTCSGSVGSGEHDLYDDKGSDVLSTSSKNSDMCDVNGMKPKSSKERIHDKIDRGRGNSPIKDEKSCEVECASESFEGSPTTSNKSSNTTKRLTIWGRTPAKKKLSLESIDYDFGEEVEIQRLEATKCELQNKIVEAARENAVLQSSLENRKKILQERRLTLEQEVARLREQLQREKDPSANISEKTKADLGESNRGEKDTANINNTMDEFVGLLNRIRDQKSNLPDLRNVSQQMQNHQTKLKDKRKDAGSLAPSHPEHSRNKDVLSGHAEISKHSPLHQHLDPHNPSAKIGVLATNFATGLTNPKRTGARMELGPNHNSSALTKLTTRLNFLKERRSQIANELQNMDRGRVSGQSIDGSEKGRGVEAQRSVQNSDDTKGSADNLQSIQDSDKRAGSQGSQPQKSDAR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 872913 890612 + CmaCh12G001900.1 Cma12g00190 304680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00190 847 SUPERFAMILY GTPase activation domain, GAP 197 390 IPR008936 GO:0007165
Cma12g00190 847 MobiDBLite consensus disorder prediction 12 28 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 478 504 - -
Cma12g00190 847 ProSiteProfiles Rho GTPase-activating proteins domain profile. 189 388 IPR000198 GO:0007165
Cma12g00190 847 MobiDBLite consensus disorder prediction 1 33 - -
Cma12g00190 847 Pfam PH domain 38 142 IPR001849 -
Cma12g00190 847 MobiDBLite consensus disorder prediction 152 181 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 611 636 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 397 504 - -
Cma12g00190 847 CDD RhoGAP 198 336 - -
Cma12g00190 847 Coils Coil 584 611 - -
Cma12g00190 847 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 7 792 - -
Cma12g00190 847 SMART PH_update 37 145 IPR001849 -
Cma12g00190 847 Pfam RhoGAP domain 198 341 IPR000198 GO:0007165
Cma12g00190 847 SUPERFAMILY PH domain-like 14 143 - -
Cma12g00190 847 Coils Coil 762 782 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 663 704 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 780 847 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 403 432 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 152 173 - -
Cma12g00190 847 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 7 792 - -
Cma12g00190 847 Gene3D - 28 144 IPR011993 -
Cma12g00190 847 MobiDBLite consensus disorder prediction 611 643 - -
Cma12g00190 847 Coils Coil 667 687 - -
Cma12g00190 847 SMART RhoGAP_3 195 385 IPR000198 GO:0007165
Cma12g00190 847 MobiDBLite consensus disorder prediction 678 704 - -
Cma12g00190 847 MobiDBLite consensus disorder prediction 806 847 - -
Cma12g00190 847 Gene3D Rho GTPase activation protein 168 389 IPR008936 GO:0007165
Cma12g00190 847 ProSiteProfiles PH domain profile. 36 143 IPR001849 -
Cma12g00190 847 CDD PH 39 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00190 - - - cmax:111495950 1609.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00886 Cma-Chr10:4379827 Cma12g00190 Cma-Chr12:872913 0 dispersed
Cma11g00888 Cma-Chr11:4502932 Cma12g00190 Cma-Chr12:872913 0 dispersed
Cma12g00190 Cma-Chr12:872913 Cma05g00556 Cma-Chr5:2714566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00190 Cma_Chr12 FPKM 3.642759 4.126066 2.710466 3.038367 12.223601 11.854732 11.120939 5.283463 4.517625 4.255156