Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00194 ATGACTACGGATCTCAGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAACGCCTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGACCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCTGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTACCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAGGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCGTCGTAGTCAAGGACAAGTTAAAGGGCAGTTCGTCATGA 522 50.96 MTTDLRCVIVAVDGSEESMNALRWALQNLKLRPSAPGVTDSTFIVLHVQPPPSIAAGLSPAPIPFGGPTDLEVPAFTAAIESHQRRITAAILEHASRICAEYKMNVETKVAIGDPKDKICEVAENLHADLLVMGSRAFGPIKRMFLGSVSNYCTNHVECPVVVVKDKLKGSSS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 897180 901069 - CmaCh12G001940.1 Cma12g00194 304684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00194 173 CDD USP_Like 8 164 - -
Cma12g00194 173 PRINTS Universal stress protein signature 5 23 IPR006015 -
Cma12g00194 173 PRINTS Universal stress protein signature 125 137 IPR006015 -
Cma12g00194 173 PRINTS Universal stress protein signature 143 165 IPR006015 -
Cma12g00194 173 Pfam Universal stress protein family 8 165 IPR006016 -
Cma12g00194 173 Gene3D HUPs 1 172 IPR014729 -
Cma12g00194 173 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 167 - -
Cma12g00194 173 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 166 - -
Cma12g00194 173 PANTHER OS02G0760500 PROTEIN 3 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00194 - - - csv:101203754 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02703 Cma-Chr4:18267040 Cma12g00194 Cma-Chr12:897180 7.52E-18 dispersed
Cma12g00194 Cma-Chr12:897180 Cma17g01091 Cma-Chr17:7693870 1.07E-21 dispersed
Cma15g00761 Cma-Chr15:3715755 Cma12g00194 Cma-Chr12:897180 1.84E-18 dispersed
Cma05g01078 Cma-Chr5:8528958 Cma12g00194 Cma-Chr12:897180 1.69E-34 transposed
Cma14g00928 Cma-Chr14:4824054 Cma12g00194 Cma-Chr12:897180 4.05E-32 transposed
Cma18g01010 Cma-Chr18:8461548 Cma12g00194 Cma-Chr12:897180 1.09E-25 transposed
Cma12g00194 Cma-Chr12:897180 Cma05g00552 Cma-Chr5:2702186 4.58E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g498 . . Bda01g00914 . . . . . . Cmo12g00148 . . . Car12g00175 . . Cpe07g00163 . . . . . . . . . . . . . . . Cone7ag0852 . . . . . . . . . . Bpe02g01155 . . Bma02g00108 . . . Cma12g00194 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004387 2 3 2 2 2 2 2 1 1 1 1 0 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00194 Cma_Chr12 FPKM 30.665697 33.456326 22.360573 20.126238 19.47348 21.347672 18.956394 13.863744 14.342251 14.165663