Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00196 | ATGAAAGGAGATTCCACCGCTACCGGTGTACATCCGCTGTTTAAGCACTTTTCCAACCCCAGCTCCGCCGTAACCGACGGCTCCACCATCGAGGTGGTGCGGCGGCCGAGGGGTCGACCGCCAGGGTCTAAAAATAAACTGAAACCGCCTCTTGTCATAACCCGGGAAAACGACTCGGCTATGCGGCCGTATGTTCTAGAAGTGCCTGGAGGAAACGACGTCGTTGAAGCAATTTCGCGATTCTGTTGTCGGAAGAATATGGGTCTTTGTGTTCTTAATGGCTCTGGGACGGTTGCGAATGTTTCTCTCCGGCAACCCTCTGCAACTGCCGGCGCCGCCGTCACGTTTCATGGCCGGTTTGAAATACTTTCCATTTCGGCCACTGTGTTTCCTCAAACGACGGCGTTTCCTCTTCCCAATGGCTTCACCATCTCCCTTGCTGGACCTCAGGGACAAATTGTCGGCGGGTTGGTCGCCGGCGCCTTGATTTCCGCTGGTACGGTTTTTGTCGTTGCCTCGTCGTTCAATAACCCCTTGTACCACCGGCTACCGGATGAGAATGAGATTCAGAATTTGGGATCCGGCGGCAGCGGCGAGGCTCATTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGGCACGGCCACGGGCAACCACTTCTGGAATCGTGTGGAGTGGCTATGTACAGTTGCCACACACCGTCCGACGTAATATGGGCGCCGACGGCGAGGCAACCGCCGCCATACTGA | 750 | 56.53 | MKGDSTATGVHPLFKHFSNPSSAVTDGSTIEVVRRPRGRPPGSKNKLKPPLVITRENDSAMRPYVLEVPGGNDVVEAISRFCCRKNMGLCVLNGSGTVANVSLRQPSATAGAAVTFHGRFEILSISATVFPQTTAFPLPNGFTISLAGPQGQIVGGLVAGALISAGTVFVVASSFNNPLYHRLPDENEIQNLGSGGSGEAHSPHVSGGGDSSGHGHGQPLLESCGVAMYSCHTPSDVIWAPTARQPPPY | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 911548 | 912297 | - | CmaCh12G001960.1 | Cma12g00196 | 304686 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00196 | 249 | Gene3D | - | 61 | 193 | - | - | |
| Cma12g00196 | 249 | ProSiteProfiles | PPC domain profile profile. | 58 | 196 | IPR005175 | - | |
| Cma12g00196 | 249 | PIRSF | ESCAROLA | 4 | 249 | IPR014476 | GO:0003680 | |
| Cma12g00196 | 249 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 62 | 177 | IPR005175 | - | |
| Cma12g00196 | 249 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 59 | 187 | - | - | |
| Cma12g00196 | 249 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 19 | 248 | IPR014476 | GO:0003680 | |
| Cma12g00196 | 249 | MobiDBLite | consensus disorder prediction | 186 | 217 | - | - | |
| Cma12g00196 | 249 | CDD | DUF296 | 62 | 175 | IPR005175 | - | |
| Cma12g00196 | 249 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cma12g00196 | 249 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED | 19 | 248 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g00196 | Cma-Chr12:911548 | Cma06g01130 | Cma-Chr6:7608057 | 6.38E-48 | dispersed | |
| Cma10g00894 | Cma-Chr10:4431382 | Cma12g00196 | Cma-Chr12:911548 | 5.81E-50 | transposed | |
| Cma01g01644 | Cma-Chr1:11260554 | Cma12g00196 | Cma-Chr12:911548 | 1.77E-89 | wgd | |
| Cma12g00196 | Cma-Chr12:911548 | Cma05g00550 | Cma-Chr5:2687553 | 7.27E-118 | wgd | |
| Cma12g00196 | Cma-Chr12:911548 | Cma09g00592 | Cma-Chr9:2739782 | 1.00E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00196 | - | - | cmos:111454367 | 460.685 |