Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00197 ATGGGTCGTTTAATTCGCCCAAGAGCTTGCTGGAGTTGGCTATTTTCAGAAATGGCTGCAATTAGACCGACCTTAATCCACAAGAATCCTTTCCTTGTCTCATCATTTTCAGTCGGGACAAACTCTCTTTCTATGAAGGAAGAAATCGACGAAAATCATATGGAAGTGCCATCTAATCGCTATCACGAGCTAGAGGTCTCAAGAAACTCATTAGGCCTTGCCCAAGAACGATCATCATGGATGGGAGTGAAAAATGTGGCTCAAGTAAAAGATGCAGATAAGGTGTTTGATGAAATGAAAATGAGATTTCTGAGTTTTAAGAAGCACAAGTACTTGGAAAATTTAGAGCACTTTCAAGCTCTGGCAGAGCTACAAGCCCCTAAGTTCATGGTGATTTCTTGTGTCGATTCTAGAGTATGCCCATCTAACATTCTTGGATTTCAACCTGGAGAAGCTTTCACCGTTCGCAACGTAGCGAACATCGTGCCGTCATGGGAGAATGGACCAACTGAAACCAATGCAGCCCTTGAATTTGCAGTAAATACACTTAAAGTTGAGAACATTTTAGTCATTGGCCACAGTAGCTGTGCTGGAATTCAGAGCCTTATGAGCATGGAAGATGATGCTACCGACTCGAGCTTTGTTCATAAATGGATGGCGAATGCAAAAGTTGCTAAATTGAGAGCTAAAGCTGCTGCTGCACATCTTAATTTTGACCAGCAATGTAAACATTGTGAGAAGGAATCAATCAACCTTTCATTGAAGAACTTAATGACGTATCCATGGATCGAAGAGCGGTTAAAACAGGAATCGCTTGCTGTTCATGGAGGATACTATGATTTCTTGAGTTGTACATTTGAGAAGTGGACTCTTGATTACAAGAACACCTGCAAAGCTGCTGGTAATGATGATCATGGATTTCAGATCAAAAATCAATCACTATGGTGTTGA 951 41.11 MGRLIRPRACWSWLFSEMAAIRPTLIHKNPFLVSSFSVGTNSLSMKEEIDENHMEVPSNRYHELEVSRNSLGLAQERSSWMGVKNVAQVKDADKVFDEMKMRFLSFKKHKYLENLEHFQALAELQAPKFMVISCVDSRVCPSNILGFQPGEAFTVRNVANIVPSWENGPTETNAALEFAVNTLKVENILVIGHSSCAGIQSLMSMEDDATDSSFVHKWMANAKVAKLRAKAAAAHLNFDQQCKHCEKESINLSLKNLMTYPWIEERLKQESLAVHGGYYDFLSCTFEKWTLDYKNTCKAAGNDDHGFQIKNQSLWC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 915950 918990 - CmaCh12G001970.1 Cma12g00197 304687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00197 316 PANTHER CARBONIC ANHYDRASE 36 316 - -
Cma12g00197 316 Pfam Carbonic anhydrase 130 281 IPR001765 GO:0004089|GO:0008270
Cma12g00197 316 Gene3D Carbonic anhydrase 85 299 IPR036874 GO:0004089|GO:0008270
Cma12g00197 316 SUPERFAMILY beta-carbonic anhydrase, cab 89 295 IPR036874 GO:0004089|GO:0008270
Cma12g00197 316 SMART Pro_CA_2 122 290 IPR001765 GO:0004089|GO:0008270
Cma12g00197 316 PANTHER CARBONIC ANHYDRASE 36 316 IPR001765 GO:0004089|GO:0008270
Cma12g00197 316 CDD beta_CA_cladeB 102 289 IPR045066 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00197 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101212995 476.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01430 Cma-Chr11:9421355 Cma12g00197 Cma-Chr12:915950 2.47E-52 dispersed
Cma12g00197 Cma-Chr12:915950 Cma14g00650 Cma-Chr14:3241654 1.21E-61 dispersed
Cma16g00275 Cma-Chr16:1280072 Cma12g00197 Cma-Chr12:915950 3.65E-97 transposed
Cma12g00197 Cma-Chr12:915950 Cma05g00549 Cma-Chr5:2683231 1.02E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g503 . . Bda01g00913 . . . . . . Cmo12g00150 . . . Car12g00178 . . Cpe07g00166 Bhi04g00925 . . . . . . . . . . . . . . . . . . . . . . Blo18g00104 . . Bpe02g01152 Bpe05g00432 Bma01g00979 . . . . Cma12g00197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00197 Cma_Chr12 FPKM 5.229151 5.177643 33.726448 35.978973 9.221896 8.651434 8.255963 4.396864 3.319732 4.308758