Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00198 ATGGCGAGGGAAAAGATCAACAACTTAACGGCGAGGCAAGTGACGTTCTCGAAGCGACGGCGAGGGCTTTTCAAGAAGGCGGAGGAGTTGTCGGTGCTCTGCGACGCCGAGGTCGCGCTGCTCGTCTTCTCCGCTACCGGAAAGCTCTTCGACTTTTCCAGTTCCAGCGTTAATGATGTTATTGCAAGATACAATTTGCACTCCAGTAACCTTGGAGAGTTGGAAGATCCATCCCTTGACCTACAGCTCGAGAATAGCAGCCACGCTCGGTTGACCAAGGAAGTTGCAGATATGAGCCATCAACTGAGGCAGATGAGAGGAGAGGATCTTCAAGGATTGAATTTAGAAGATTTGAAGCAATTGGAAGGAGTGCTTGAAATAGGCTTAGCACGTGTTCTTCAAACCAAGGAAAGGAAGATTATGAATGAAATTAATGCGCTTGAGCTTAAGGGAGCCAGATTGATGGAAGAGAACAGGACGCTGAATCGGCAGATGATAAGGTTGTCGAATCAAAGAAGGCCACTGCTGGTAGTTTCCGACGTTCCGGTGCCGGAAGACGGGGTTTCGTCGGACTCCGCCGCCAACATGTACAGCTGCAACAGCGGCCCTCCCGCCGACGACGACAGCTCCGATACCTCTCTCAAATTAGGGTTACCAAGGGCTTGCATGCCCAAATTGAGGTCAAAACTAGCGAAGATGAGAAAAGGCAGAGAATCATTAAAATTAATGGAACCGGAGGGAGCTTTACTTCGTCCTTTGCATCGGAGCTCCTCCTGTGATTTACGATGGCAGTTTTATTTCTCGGGATCGTTTGATCTCTCAGTGATCCGCTCTCATCTCGCCATGAACAACGCCTCTGTCAAAGGCCTCGAAGTCTTCGATTTCACCGAAGAAGACGAGCTTCCTGAATTGATCTCCGAGAGGTGTCTCAGCAAATTCAAAAACCCTAATCTCGAAATCAACACTGTTTTGAAGTATGGATGTCTTGAATTAGGTAGTGTCCAATGTGTTGAAGGGAAAGAGGTTGAAAATCCACATATGGATGTTGACTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATATCCCCTCGGGCATATCTAAAGAGCAATTGATCATGGAAGAAGAGAAATATCAATTGGATGTCAATACAGAATCAGAATGGAATACTCATTCACAAGACATGTTTGTGCAAGTAAATAATCACGTGACAGGATGCTTTGGCTCTGAACTTGGAAAAGTTGGATCTAGCTCTCAAAGTTCTATCCTGGGGTTAAATTGCACTCTTCCTGAGTTTGCCGCTAAAAGGGAGCAAGTGGATGCACTTTCATATCCTAATGGAAGCATGAATGGGAGTTCTCCAATGAGCTCTCCTTCGGAACTTGTAGAGGATAGTGTTTCGCCGAATGGGAGGTCTTCAGATAAATGCTCATCTGACAATGAAATGGATGATCTTAACCAAGAGGTTGTTCTATGTCCCGATTATATTATATATGGAGATTCTTATTGTACCAGTTCGCAGTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTTCTGATTATGGGAGCAACGAGTTCCTTAACCTTGAATGGAGAGTTGATGATCTCGTTAATATTGAGTGTCATTGGTTTCAAAGGGTTGAATTTGTGACGATTAAGCTCCATACTATATCAAAGGATGTTGGTCAACGTGATAATGCATGTGGCACTTCTGGCCTTAAGGAAGTGAAGATTGTTCTGGTTGATCCTTGCTGGTCTGAGAAACAACAAAAAATTAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTTGACTTTGATGAGCATTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCCGTTTCCATTAGTAAGAGGGATGTTGACTTGTTGCAACCAGAGACCTTTGTCAATGATACAATAATTGACTTTTACATCCAGTATTTGAAGAGCCAAATAGACCCTAAGGAGAAGCATAGATTTCACTTCTTCAATAGCTTTTTCTTTAGGAAGCTAGCTGACCTTGATAAAGATCCATCAAGTGCTTCTGATGGCAAAGCTGCTTTTCTTCGTGTTCGAAAATGGACTCGGAAAGTGAATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAACCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGTGAAGTGGCTAGATATAGCGATGAAAACCTGATCAAGTCAACAAAAGTACCGTGTATATTGCATATGGATTCTATTAAGGGAAGTCACGCAGGCCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAACGAAAGAAACAAGGATGCATCTGAAGATATTTCATCAAAGTTTAAGAACCTTCGGTTTCTCCCACTCGAGCTTCCGCAGCAGGAAAATTCATTTGATTGTGGATTATTTTTGCTCCACTATCTAGAACTCTTTTTGGCAGAAGCTCCTCTTGATTTCAGTCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCTTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAAAACCGATCTCGAGAAATGTCCACCACTGCTTGCAGTGATGATCTTTCTAAATTTCCATCAAATAATGAGGATGAAGCTGGTGTGGAGCTTGTTCCGGAAAGTGGAAGACTGGCAGAGACATTCGATCACAATTTGTCAAGCTCACAAGCTGCTGATGGGATTGAAATTACTCTGTTATCTGAATCTTCGAGTAGACATAACCACTTTATCGACGGTTCTGGTTTGGTTGTCAGAGAACTATTTGAACCAGGCACATCGAATGGATCATTACTTGGACACTATCAACCTTTTGCCCAGACATCATCGTATTTTGATACAAATGTTACCGTGCTGGAGGAAGATGCAGATACGGAAACTGGAGACCGTTTCATGTACTTGCCTTCCGAACAGGATGGTTTGCAGCCAGTTGATGCAATGACATCTCAAGCTTGTCGTTTTCCAGGTTCGTCAAGAGGCCTAGAATCCGAGACTGCTTTTGACTTGTGCATGTCTATTCAACCAGAGCATGGTAGTGGCATTGCCTCATCCCCCTCAAGTCACTCAGATGTCTTAGAAGATATGGGAATCATTGAAAGTTGCGATGTTAGGGAACCAAGCCCTGGTAACAAAGAAGAAATTATCAGAAAAAGGCCCTTACCAATTGAGAACCTGGAACCTATAGCAGAATGCCCTACTTCTGCTGCTACCACGACACAAGATACCGACACCATTGTCGTTTCTAAAGATACTAATGATACTTGTGAAGACATGGAAAATGATGGTTCTGATCCCCATCGTAAAGAAACTGTCTTTGCATCACCGTGTCTAGATGAGGATATATCAACCAAAACAGACGTCGAACATGATGATGCAGTGGTGGATGCTTCGGTTACTGAGGTCGACTTACACGAGCAACCTCCTGCCAAGAAACCGAGGCATTTTCCATACCCCGAAGAAGCAAGCAACGGTCTCGGAGACGTTCTGCTAGAGGATGCAGACTTATAA 3597 42.95 MAREKINNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFDFSSSSVNDVIARYNLHSSNLGELEDPSLDLQLENSSHARLTKEVADMSHQLRQMRGEDLQGLNLEDLKQLEGVLEIGLARVLQTKERKIMNEINALELKGARLMEENRTLNRQMIRLSNQRRPLLVVSDVPVPEDGVSSDSAANMYSCNSGPPADDDSSDTSLKLGLPRACMPKLRSKLAKMRKGRESLKLMEPEGALLRPLHRSSSCDLRWQFYFSGSFDLSVIRSHLAMNNASVKGLEVFDFTEEDELPELISERCLSKFKNPNLEINTVLKYGCLELGSVQCVEGKEVENPHMDVDLDECNRGCDNGISHIPSGISKEQLIMEEEKYQLDVNTESEWNTHSQDMFVQVNNHVTGCFGSELGKVGSSSQSSILGLNCTLPEFAAKREQVDALSYPNGSMNGSSPMSSPSELVEDSVSPNGRSSDKCSSDNEMDDLNQEVVLCPDYIIYGDSYCTSSQLTFSHNGIKINGFSDYGSNEFLNLEWRVDDLVNIECHWFQRVEFVTIKLHTISKDVGQRDNACGTSGLKEVKIVLVDPCWSEKQQKIRSLDSRYMAIWNMSLDFDEHFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGKAAFLRVRKWTRKVNLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDENLIKSTKVPCILHMDSIKGSHAGLKNLIQSYLLEEWNERNKDASEDISSKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILENRSREMSTTACSDDLSKFPSNNEDEAGVELVPESGRLAETFDHNLSSSQAADGIEITLLSESSSRHNHFIDGSGLVVRELFEPGTSNGSLLGHYQPFAQTSSYFDTNVTVLEEDADTETGDRFMYLPSEQDGLQPVDAMTSQACRFPGSSRGLESETAFDLCMSIQPEHGSGIASSPSSHSDVLEDMGIIESCDVREPSPGNKEEIIRKRPLPIENLEPIAECPTSAATTTQDTDTIVVSKDTNDTCEDMENDGSDPHRKETVFASPCLDEDISTKTDVEHDDAVVDASVTEVDLHEQPPAKKPRHFPYPEEASNGLGDVLLEDADL 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 922037 935804 + CmaCh12G001980.1 Cma12g00198 304688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00198 1198 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00198 1198 SUPERFAMILY SRF-like 4 67 IPR036879 GO:0003677|GO:0046983
Cma12g00198 1198 MobiDBLite consensus disorder prediction 191 208 - -
Cma12g00198 1198 MobiDBLite consensus disorder prediction 446 484 - -
Cma12g00198 1198 Coils Coil 88 108 - -
Cma12g00198 1198 Gene3D - 623 867 - -
Cma12g00198 1198 MobiDBLite consensus disorder prediction 1162 1198 - -
Cma12g00198 1198 MobiDBLite consensus disorder prediction 446 478 - -
Cma12g00198 1198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 52 IPR002100 GO:0003677|GO:0046983
Cma12g00198 1198 Gene3D - 671 802 - -
Cma12g00198 1198 ProSiteProfiles Ubiquitin-like protease family profile. 631 825 IPR003653 GO:0006508|GO:0008234
Cma12g00198 1198 CDD MADS_MEF2_like 5 70 IPR033896 GO:0000977|GO:0045944
Cma12g00198 1198 Coils Coil 130 171 - -
Cma12g00198 1198 Pfam Ulp1 protease family, C-terminal catalytic domain 646 835 IPR003653 GO:0006508|GO:0008234
Cma12g00198 1198 PRINTS MADS domain signature 33 54 IPR002100 GO:0003677|GO:0046983
Cma12g00198 1198 PRINTS MADS domain signature 18 33 IPR002100 GO:0003677|GO:0046983
Cma12g00198 1198 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 289 1159 - -
Cma12g00198 1198 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 289 1159 - -
Cma12g00198 1198 SUPERFAMILY Cysteine proteinases 623 868 IPR038765 -
Cma12g00198 1198 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Cma12g00198 1198 MobiDBLite consensus disorder prediction 1162 1180 - -
Cma12g00198 1198 Pfam K-box region 87 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma12g00198 1198 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Cma12g00198 1198 Gene3D - 8 76 IPR036879 GO:0003677|GO:0046983
Cma12g00198 1198 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00842 Cma-Chr3:6328471 Cma12g00198 Cma-Chr12:922037 1.42E-74 dispersed
Cma04g01728 Cma-Chr4:8685705 Cma12g00198 Cma-Chr12:922037 1.34E-27 dispersed
Cma07g00570 Cma-Chr7:2477419 Cma12g00198 Cma-Chr12:922037 2.76E-57 dispersed
Cma07g01190 Cma-Chr7:6534588 Cma12g00198 Cma-Chr12:922037 1.15E-52 dispersed
Cma12g00198 Cma-Chr12:922037 Cma19g00475 Cma-Chr19:5685284 9.35E-48 dispersed
Cma18g00215 Cma-Chr18:1160471 Cma12g00198 Cma-Chr12:922037 2.24E-16 transposed
Cma12g00198 Cma-Chr12:922037 Cma05g00547 Cma-Chr5:2654676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35958 PF02902 Peptidase_C48 2.20E-39 CL0125 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00198 K08596 - csv:101206097 1311.98