Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00199 ATGGTTCATGCTGGTTCTACCCAATTTTCACATAAACTGGGGATTCAAATCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGGCTACATCTTGTTACTATCATTCCTACGTCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCGTCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTTGAACCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTGCAGCTTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGAAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGCGTCATTGCCTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCCGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTACGTTCAGCCTTTACTGCTATGGACAGGAGCTACATTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCGAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAATGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACAGCTGGGGGTCTTGGTACCGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTAGATGTCAACAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTCTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAGTACTTGTGTGTAAAGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAGGTCTCTGGACGTCCTGCTCGCTCATCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCAGGAACAACGCCTAAGCCTTCAACTGGATCAGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCAGTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGATCTCACAGGACTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCACTCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATGTTTCTTCCTCGAGCGTGCAGAATAAGCAAGATGGCGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAACTTCCACGCAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGGTACAAAAAAGGAAAAGAAGAGAAAAGAACAGTGTGATGTTGGTGATGGCGAGGAATTAAAACTAATCCTTGATATAACTAGCATGGGTTACATCAACGTTACCCAAATGAATTATCTATCGGTATTAATTAAGCAGATATGGAGCCATTACACTATTGACAGCATGGCAAGCCAAATCCTACTGACATGA 2268 44.27 MVHAGSTQFSHKLGIQIVHGCNKLHISGKGKTRLHLVTIIPTSHDLRYDPGRLQLLRSASRPVYPMSSRANVFVCRSVLEPSGGGAGTAVLKTAALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAIKQRLLNFVRALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTTPKPSTGSVSNTQTQNPTSTPEQSSSEKPVTSNEVKGEKKDLTGLNAKDNTPRGTPPKWSLSAAGPSSEKADVSSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKETSTQRNGSEFGPKSKDMKDGQMPAVPGGTKKEKKRKEQCDVGDGEELKLILDITSMGYINVTQMNYLSVLIKQIWSHYTIDSMASQILLT 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 935507 942820 - CmaCh12G001990.1 Cma12g00199 304689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00199 755 MobiDBLite consensus disorder prediction 645 704 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 659 675 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 496 521 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 602 619 - -
Cma12g00199 755 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 689 - -
Cma12g00199 755 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 689 IPR045042 -
Cma12g00199 755 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Cma12g00199 755 Gene3D - 299 354 IPR023408 -
Cma12g00199 755 MobiDBLite consensus disorder prediction 522 566 - -
Cma12g00199 755 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cma12g00199 755 Gene3D - 163 297 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 496 631 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 567 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00199 Cma-Chr12:935507 Cma16g00747 Cma-Chr16:3999600 0 dispersed
Cma12g00199 Cma-Chr12:935507 Cma05g00546 Cma-Chr5:2650712 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00199 K22047 - csv:101213477 1163.67