Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00199 ATGGTTCATGCTGGTTCTACCCAATTTTCACATAAACTGGGGATTCAAATCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGGCTACATCTTGTTACTATCATTCCTACGTCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCGTCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTTGAACCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTGCAGCTTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGAAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGCGTCATTGCCTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCCGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTACGTTCAGCCTTTACTGCTATGGACAGGAGCTACATTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCGAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAATGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACAGCTGGGGGTCTTGGTACCGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTAGATGTCAACAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTCTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAGTACTTGTGTGTAAAGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAGGTCTCTGGACGTCCTGCTCGCTCATCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCAGGAACAACGCCTAAGCCTTCAACTGGATCAGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCAGTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGATCTCACAGGACTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCACTCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATGTTTCTTCCTCGAGCGTGCAGAATAAGCAAGATGGCGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAACTTCCACGCAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGGTACAAAAAAGGAAAAGAAGAGAAAAGAACAGTGTGATGTTGGTGATGGCGAGGAATTAAAACTAATCCTTGATATAACTAGCATGGGTTACATCAACGTTACCCAAATGAATTATCTATCGGTATTAATTAAGCAGATATGGAGCCATTACACTATTGACAGCATGGCAAGCCAAATCCTACTGACATGA 2268 44.27 MVHAGSTQFSHKLGIQIVHGCNKLHISGKGKTRLHLVTIIPTSHDLRYDPGRLQLLRSASRPVYPMSSRANVFVCRSVLEPSGGGAGTAVLKTAALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAIKQRLLNFVRALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTTPKPSTGSVSNTQTQNPTSTPEQSSSEKPVTSNEVKGEKKDLTGLNAKDNTPRGTPPKWSLSAAGPSSEKADVSSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKETSTQRNGSEFGPKSKDMKDGQMPAVPGGTKKEKKRKEQCDVGDGEELKLILDITSMGYINVTQMNYLSVLIKQIWSHYTIDSMASQILLT 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 935507 942820 - CmaCh12G001990.1 Cma12g00199 304689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00199 755 MobiDBLite consensus disorder prediction 645 704 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 659 675 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 496 521 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 602 619 - -
Cma12g00199 755 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 689 - -
Cma12g00199 755 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 689 IPR045042 -
Cma12g00199 755 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Cma12g00199 755 Gene3D - 299 354 IPR023408 -
Cma12g00199 755 MobiDBLite consensus disorder prediction 522 566 - -
Cma12g00199 755 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cma12g00199 755 Gene3D - 163 297 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 496 631 - -
Cma12g00199 755 MobiDBLite consensus disorder prediction 567 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00199 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1163.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00199 Cma-Chr12:935507 Cma16g00747 Cma-Chr16:3999600 0 dispersed
Cma12g00199 Cma-Chr12:935507 Cma05g00546 Cma-Chr5:2650712 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g513 . . . . . . . . . Cmo12g00153 . . . . . . Cpe07g00169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00199 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00875 . 144 504 Mechanosensitive Ion Channel Family AT4G00290 64.8 9.3e-139 491.1
Cma16g00747 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 58.6 2.3e-196 682.9
Cma05g00546 . 10 704 Mechanosensitive Ion Channel Family AT5G10490 55.5 8.3e-191 664.5
Cma12g00199 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 57.4 1.2e-189 660.6
Cma05g00546 . 10 684 Mechanosensitive Ion Channel Family AT1G58200 57.4 1.8e-201 699.9
Cma12g00199 . 10 502 Mechanosensitive Ion Channel Family AT1G58200 67.6 6.4e-191 664.8
Cma16g00747 . 6 710 Mechanosensitive Ion Channel Family AT1G58200 50.4 7.6e-176 614.8
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 55.6 1.3e-263 906.7
Cma20g00732 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 53.1 1.6e-247 853.2
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.8 2.6e-282 968.8
Cma11g01360 . 65 932 Mechanosensitive Ion Channel Family AT1G78610 52.0 5.9e-234 808.1
Cma20g00732 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.7 8.4e-233 804.3
Cma11g01360 . 270 926 Mechanosensitive Ion Channel Family AT2G17000 56.6 5.9e-202 701.8
Cma10g00752 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.4 2.8e-200 696.0
Cma01g01705 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 50.2 2.3e-165 580.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00199 Cma_Chr12 FPKM 6.328753 8.487739 7.68399 8.193274 14.242579 14.450235 14.004566 12.753524 11.737423 13.233409