Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00201 ATGGCAAACCTTGATGTTCCGTTAATCACTGAGGCTAACGGAGCAACATCGTTGGCCGGATCCTCCGATTATATGAAGCTTGATGCAGTCGAACGCTTTAAAATCAATGCTTCTTTCACTCGGGTTTCCGATAAGGACCTTTACAAGTATGATATCCGCGGGAGTCGTGCTCATGCATCGATGCTCGCCAAGCAGGGATTGATAAGCGTCAGTGACGAAGACAGTATTCTAACAGGTCTTGATGCGATCGAGAGGCGTATTCAAAATGGCGAGTTCGTCTGGAGAGCTGATAGGGAAGATGTTCACATGAACATTGAAGCTGCGCTTACTGATTTGATTGGCGAACCTGCCAAGAAACTTCATCCTGCTCGGAGCCGCAACGACCAAGTCGAGACTGATTTTCGCTTGTGGTGCCGCGATGCCATCGACTCCATTGTCGATAGGATCAAAGATCTTCAGATTGCGATGGTGGATTTGGCAATTAAGAATGCAGGAACTATTGTTCCAGGCTATACACATTTGCAGAGAGCACAGCCCGTCCTACTTCAGCATCTTCTCTTGGCATTCGTTGAGCAGCTTGATCGGGATTCTGGTCGATTGCTGGACTGCAGATCTAGACTGAATTTCTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTCCCAATTGATCGATTCACGACTTCGAACGCTTTAGGATTCTCATCTCCTTTGAGAAACAGTATCGATGCTGTTTCAGATCGGGATTTTGCAATGGAGTTTCTGTCTGCCAATTCAATTACAGCCATCCATCTTTCTCGTCTGGGAGAAGAATGGGTACTGTGGGCCTCAGAGGAGTTTGGATTTATCACACCTAATGACTCTGTTTCAACTGGAAGTAGCATAATGCCCCAAAAGAAAAACCCGGATCCAATGGAACTCGTTCGTGGAAAGTCGGCTAGAGTCGTAGACGATTTAGTAACCCTTTTAACATTGTGCAAGGGTCTTCCTCTTGCATACAACCAAGATCTGCAGAAGGCTTCTCTTGGTCATCTTGACGCGACTACACTTGCAGACTATCTCGTGCATAAGGTTAATTTCGGAACATCTCATGATATTGTAGGCAAGTGTGTAACAATGTGTCTTGGAAAGAACTGCCAGCTGAAGGACCTGAGTCTCAATGATCTGCGAACGTTGAGTCCGATCTTTGACGAGGACGTTTACGAGTTTCTTGGAGTAGAAAATGCAGTTAACAAATTTTCATCTTATGGCTCCACGGGTTCGGAACGTGTTGCCGGTCAACTCCAATATTGGATCCACAAACTTGGCACT 1314 46.35 MANLDVPLITEANGATSLAGSSDYMKLDAVERFKINASFTRVSDKDLYKYDIRGSRAHASMLAKQGLISVSDEDSILTGLDAIERRIQNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHPARSRNDQVETDFRLWCRDAIDSIVDRIKDLQIAMVDLAIKNAGTIVPGYTHLQRAQPVLLQHLLLAFVEQLDRDSGRLLDCRSRLNFCPLGACALAGTGLPIDRFTTSNALGFSSPLRNSIDAVSDRDFAMEFLSANSITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVVDDLVTLLTLCKGLPLAYNQDLQKASLGHLDATTLADYLVHKVNFGTSHDIVGKCVTMCLGKNCQLKDLSLNDLRTLSPIFDEDVYEFLGVENAVNKFSSYGSTGSERVAGQLQYWIHKLGT 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 950680 954038 - CmaCh12G002010.1 Cma12g00201 304691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 211 227 - -
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 328 347 - -
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 249 273 - -
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 160 180 - -
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 119 141 - -
Cma12g00201 438 PRINTS Argininosuccinate lyase family signature 293 309 - -
Cma12g00201 438 PANTHER ARGININOSUCCINATE LYASE 25 340 - -
Cma12g00201 438 Pfam Argininosuccinate lyase C-terminal 347 412 IPR029419 -
Cma12g00201 438 PANTHER ARGININOSUCCINATE LYASE 25 340 IPR009049 GO:0004056|GO:0042450
Cma12g00201 438 PANTHER ARGININOSUCCINATE LYASE 344 437 - -
Cma12g00201 438 Gene3D Fumarase/aspartase (Central domain) 137 342 - -
Cma12g00201 438 ProSitePatterns Fumarate lyases signature. 293 302 IPR020557 GO:0003824
Cma12g00201 438 PANTHER ARGININOSUCCINATE LYASE 344 437 IPR009049 GO:0004056|GO:0042450
Cma12g00201 438 Hamap Argininosuccinate lyase [argH]. 18 434 IPR009049 GO:0004056|GO:0042450
Cma12g00201 438 TIGRFAM argH: argininosuccinate lyase 43 341 IPR009049 GO:0004056|GO:0042450
Cma12g00201 438 CDD Argininosuccinate_lyase 43 432 IPR009049 GO:0004056|GO:0042450
Cma12g00201 438 Gene3D - 347 413 - -
Cma12g00201 438 Pfam Lyase 43 317 IPR022761 -
Cma12g00201 438 SUPERFAMILY L-aspartase-like 34 436 IPR008948 GO:0003824
Cma12g00201 438 PRINTS Fumarate lyase superfamily signature 120 138 IPR000362 -
Cma12g00201 438 PRINTS Fumarate lyase superfamily signature 293 309 IPR000362 -
Cma12g00201 438 PRINTS Fumarate lyase superfamily signature 165 183 IPR000362 -
Cma12g00201 438 PRINTS Fumarate lyase superfamily signature 249 276 IPR000362 -
Cma12g00201 438 Gene3D - 44 247 IPR024083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00201 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101213711 696.427
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00201 Cma-Chr12:950680 Cma05g00543 Cma-Chr5:2639310 0 wgd
Cma12g00201 Cma-Chr12:950680 Cma09g00593 Cma-Chr9:2744449 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0043492 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00201 Cma_Chr12 FPKM 0.465753 0.685258 0.0 0.0 0.0 0.0 0.325082 1.723847 2.118001 1.858536