Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00206 ATGAGCGAACCAGAGGAGAGGTTTTCCGGTTTAGATCCAGCGTTTGCGGGTTATGGTCTTGACTCTGGGAAATGCGGCAGCAAGATTAGTATGGAAAAGAAAAAGGAAATAATCCATGAGATTGCCCGAAAGTCCAAAGCCGCACCTGAAATCCTTAGGTCTCTTACTCGAAGTGATTTACTTGAGATCATCTGTGCTGAAATGGGGAAAGAAATGAAGAACACTGGATATTCAAAATCTCAAATGATCGAGTACCTTTTGAAGCTGGTCTCTCAGAAATCCGACAGAAGTAATACTCATGCATCTTTACTAGACAAAACTCAAACTGGCCACAAGAGACCTCGAAACACGAACCGAACATCTATTCAACTCTTGGATTCGAATAATACTTCCATGGAGACTGATGAGGAAAGTGCTGAAGTCAAACTTTGTCGGAATGTGGCTTGCAAAGCACCTCTAAATCCAGAGTTTGCTTTTTGCAAGAGATGTTCATGTTGCATTTGCCATTGTTACGATGATAACAAGGATCCAAGTCTTTGGCTGACCTGTGGCTCTGACCCTTCTAATGAGAACGATTCTTGTGGAATGTCATGTCATTTGGAGTGTGCCCTGAAGCATGAAAGGACTGGAATTGTGAAGAATGGTCTCTGTGAAAAATTAGATGGAAGTTTTTACTGCGTTTCATGTGGAAAGATCAATGGATTGATGGGAAGTTGGAGAAGACAACTGGTAAATGCAAAGGAGGCCAGAAGAGTGGATGCATTATGTCTAAGGCTATCCTTGTGTCACAAGATTCTTGTAGGGACAAATCTATACAAAGAAGTGCACAAGACAGTAGAGTTCGCCATGAATATGATGACAAATGAAGTGGGACCCTTAGATGAGGTTTGCTTGAGAATGGCAAGAGGCATTGTCAACCGGCTATCCTGTGGTGCGGAGGTTCAGAAACTGTGTGCTTCTGCTGTGGAGGCCTTTGATTCCATGTGTTGTGTCCCTTGCGTGGATGGTATGCAAAAAAGAGAAAAATTGGATTGCGAGATCCTATTTGAAGATTCTTCACCTACCTCTGTGATGGTCGTGCTCCGATATGATGATCACATGTTAAGAGACTTCTTAGGCTGCAGGCTTTGGTATCGTAAAGCTAACATGGAGGATTATCCAGACCAGCCATCTTTCATTGCATTGAAGCCAGAAAAAAACTTTAAGATCACTGATCTTTCCCCTTCAACCGAGTACCACTGCAAGGTCTCTTTATTTAGTAGCACACAAGTTTTTGGTGTCTGGGAAGCCAAATGGGTCACGCCGAAATTATCGACGCCGCGTCCAGCTTTGGAGAAGCATAGAAATGGAGAAATTAAGAACACTAATCTACTTCATTCTCAGGTGGATTCGAAAAACAACCTGATTAATCTTCACTCATTGGATGGACTTGACAAGAGGAAGCTTTACAAATATCCCTCTCTAAAGAACTCAATCACTTCGATGAAATCGATATCAGTTTGTCCTTCAACACCTTGTAAATTAACCGAAACCCGCATCATGCTCGGTTTTAACTGCACAAGGCGAACTGAAGAGTCCGACTATGATTATTCTGTTAGAATGGTGAAATGGCTAGAGCATGAAGGCCACATTGACGTAGATTTTCGAGTGAAGTTCCTAACTTGGTTCAGCTTGAAAGCATCAGTGAAAGACCGAAGAGTTGTTAGTGCTTTTATCGACGCTTTGATCGACGACCCACCAAGCTTGGCAGGACAACTAAGCCACACCTTCATGGATGAGATCTTCTGTAACCAGAAACCAGTTCCCCGGCATGAATACTGCAATTGGATATGTCGTTAA 1839 42.69 MSEPEERFSGLDPAFAGYGLDSGKCGSKISMEKKKEIIHEIARKSKAAPEILRSLTRSDLLEIICAEMGKEMKNTGYSKSQMIEYLLKLVSQKSDRSNTHASLLDKTQTGHKRPRNTNRTSIQLLDSNNTSMETDEESAEVKLCRNVACKAPLNPEFAFCKRCSCCICHCYDDNKDPSLWLTCGSDPSNENDSCGMSCHLECALKHERTGIVKNGLCEKLDGSFYCVSCGKINGLMGSWRRQLVNAKEARRVDALCLRLSLCHKILVGTNLYKEVHKTVEFAMNMMTNEVGPLDEVCLRMARGIVNRLSCGAEVQKLCASAVEAFDSMCCVPCVDGMQKREKLDCEILFEDSSPTSVMVVLRYDDHMLRDFLGCRLWYRKANMEDYPDQPSFIALKPEKNFKITDLSPSTEYHCKVSLFSSTQVFGVWEAKWVTPKLSTPRPALEKHRNGEIKNTNLLHSQVDSKNNLINLHSLDGLDKRKLYKYPSLKNSITSMKSISVCPSTPCKLTETRIMLGFNCTRRTEESDYDYSVRMVKWLEHEGHIDVDFRVKFLTWFSLKASVKDRRVVSAFIDALIDDPPSLAGQLSHTFMDEIFCNQKPVPRHEYCNWICR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 970064 973288 - CmaCh12G002060.1 Cma12g00206 304696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00206 612 CDD PHD_VIN3_plant 164 229 - -
Cma12g00206 612 MobiDBLite consensus disorder prediction 98 131 - -
Cma12g00206 612 MobiDBLite consensus disorder prediction 114 131 - -
Cma12g00206 612 SUPERFAMILY Fibronectin type III 351 423 IPR036116 GO:0005515
Cma12g00206 612 PANTHER OS08G0220600 PROTEIN 12 610 - -
Cma12g00206 612 Pfam PHD - plant homeodomain finger protein 144 263 IPR032881 -
Cma12g00206 612 PANTHER VIN3-LIKE PROTEIN 2-RELATED 12 610 IPR044514 GO:0010048|GO:0040029
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00206 - - - bhj:120075533 1057.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00537 Cma12g00206 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00690 Cma-Chr5:3595253 Cma12g00206 Cma-Chr12:970064 1.90E-16 dispersed
Cma11g00387 Cma-Chr11:1918549 Cma12g00206 Cma-Chr12:970064 3.75E-17 dispersed
Cma11g00597 Cma-Chr11:2853975 Cma12g00206 Cma-Chr12:970064 1.64E-19 dispersed
Cma12g00206 Cma-Chr12:970064 Cma05g00537 Cma-Chr5:2614050 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g524 . . Bda01g00908 . . . . . . Cmo12g00159 . . . Car12g00187 Sed04g0201 . Cpe07g00175 Bhi04g01391 Tan02g2472 Cmetu03g1987 . Hepe10g0437 . Lcy13g1488 Cla08g01157 Cam08g1617 Cec08g1192 Cco08g1315 Clacu08g1316 . Cre08g1101 . . Cone17ag1181 Cone20ag0550 . . . Cme03g01813 . . . . Bpe02g01146 . . . . . . Cma12g00206 Cma05g00537 Car05g00484 . Cpe11g00473 . . . . . . . . . . . . . . . . . Chy03g01316 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008507 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00206 Cma_Chr12 FPKM 0.727273 0.382377 0.315826 0.18705 2.393899 3.096786 3.023428 0.0 0.0 0.0