Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00207 ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTATTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGAATGCTGTGGACTTCCCCGGACGTAGTGGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTCCGTCAGGAGGTTGCTTTCAGGATGCAGCGCAACAAGGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTCTCGAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGGGCAGTTTGAAAGTGATGCTGCTGCTGCTGCTGCTGTCAAAGAAGACTTGGACTGCAGACAGGAAAAAAAGGCCATGATGATGCCTGTTTCTGGCTTTTTTTCATTCATTCCGGCCCTCGTTTTGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTTCAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCGTATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTGCAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATTAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAAGGCTCGAGTAATCCTTCTGTTGACCTTGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAATGATGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1941 49.25 MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLNAVDFPGRSGQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHRVTPAGQFESDAAAAAAVKEDLDCRQEKKAMMMPVSGFFSFIPALVLGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEARMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHINRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELANPSDTDIDIPTNFD 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 975513 989072 + CmaCh12G002070.1 Cma12g00207 304697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00207 646 SMART tify_2 71 106 IPR010399 -
Cma12g00207 646 SMART tify_2 378 413 IPR010399 -
Cma12g00207 646 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 SMART GATA_3 511 564 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 MobiDBLite consensus disorder prediction 165 194 - -
Cma12g00207 646 MobiDBLite consensus disorder prediction 565 646 - -
Cma12g00207 646 CDD ZnF_GATA 200 246 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSitePatterns GATA-type zinc finger domain. 517 544 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 512 555 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 66 249 IPR045280 GO:0006355
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 552 646 IPR045280 GO:0006355
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 308 553 IPR045280 GO:0006355
Cma12g00207 646 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 244 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 66 249 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 552 646 - -
Cma12g00207 646 Gene3D - 513 559 IPR013088 GO:0006355|GO:0008270
Cma12g00207 646 MobiDBLite consensus disorder prediction 603 622 - -
Cma12g00207 646 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cma12g00207 646 CDD ZnF_GATA 516 551 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSiteProfiles Tify domain profile. 378 413 IPR010399 -
Cma12g00207 646 ProSiteProfiles GATA-type zinc finger domain profile. 200 245 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Cma12g00207 646 ProSiteProfiles CCT domain profile. 446 488 IPR010402 GO:0005515
Cma12g00207 646 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 Gene3D - 191 250 IPR013088 GO:0006355|GO:0008270
Cma12g00207 646 Pfam tify domain 381 412 IPR010399 -
Cma12g00207 646 Pfam tify domain 73 105 IPR010399 -
Cma12g00207 646 Pfam CCT motif 132 174 IPR010402 GO:0005515
Cma12g00207 646 Pfam CCT motif 446 487 IPR010402 GO:0005515
Cma12g00207 646 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 Pfam GATA zinc finger 517 553 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 308 553 - -
Cma12g00207 646 MobiDBLite consensus disorder prediction 329 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00207 - - - cmax:111495925 598.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00536 Cma-Chr5:2605144 Cma12g00207 Cma-Chr12:975513 4.63E-53 dispersed
Cma12g00207 Cma-Chr12:975513 Cma19g00483 Cma-Chr19:5772608 8.21E-56 dispersed
Cma12g00207 Cma-Chr12:975513 Cma05g00535 Cma-Chr5:2594145 2.28E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35960 PF06203 CCT 3.00E-13 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00207 Cma_Chr12 FPKM 18.727682 19.695093 13.539647 13.868386 16.720581 18.716728 16.47386 5.706408 5.137857 5.366947