Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00207 ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTATTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGAATGCTGTGGACTTCCCCGGACGTAGTGGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTCCGTCAGGAGGTTGCTTTCAGGATGCAGCGCAACAAGGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTCTCGAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGGGCAGTTTGAAAGTGATGCTGCTGCTGCTGCTGCTGTCAAAGAAGACTTGGACTGCAGACAGGAAAAAAAGGCCATGATGATGCCTGTTTCTGGCTTTTTTTCATTCATTCCGGCCCTCGTTTTGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTTCAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCGTATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTGCAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATTAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAAGGCTCGAGTAATCCTTCTGTTGACCTTGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAATGATGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1941 49.25 MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLNAVDFPGRSGQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHRVTPAGQFESDAAAAAAVKEDLDCRQEKKAMMMPVSGFFSFIPALVLGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEARMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHINRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELANPSDTDIDIPTNFD 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 975513 989072 + CmaCh12G002070.1 Cma12g00207 304697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00207 646 SMART tify_2 71 106 IPR010399 -
Cma12g00207 646 SMART tify_2 378 413 IPR010399 -
Cma12g00207 646 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 SMART GATA_3 511 564 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 MobiDBLite consensus disorder prediction 165 194 - -
Cma12g00207 646 MobiDBLite consensus disorder prediction 565 646 - -
Cma12g00207 646 CDD ZnF_GATA 200 246 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSitePatterns GATA-type zinc finger domain. 517 544 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 512 555 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 66 249 IPR045280 GO:0006355
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 552 646 IPR045280 GO:0006355
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28 308 553 IPR045280 GO:0006355
Cma12g00207 646 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 244 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 66 249 - -
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 552 646 - -
Cma12g00207 646 Gene3D - 513 559 IPR013088 GO:0006355|GO:0008270
Cma12g00207 646 MobiDBLite consensus disorder prediction 603 622 - -
Cma12g00207 646 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cma12g00207 646 CDD ZnF_GATA 516 551 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSiteProfiles Tify domain profile. 378 413 IPR010399 -
Cma12g00207 646 ProSiteProfiles GATA-type zinc finger domain profile. 200 245 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Cma12g00207 646 ProSiteProfiles CCT domain profile. 446 488 IPR010402 GO:0005515
Cma12g00207 646 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 Gene3D - 191 250 IPR013088 GO:0006355|GO:0008270
Cma12g00207 646 Pfam tify domain 381 412 IPR010399 -
Cma12g00207 646 Pfam tify domain 73 105 IPR010399 -
Cma12g00207 646 Pfam CCT motif 132 174 IPR010402 GO:0005515
Cma12g00207 646 Pfam CCT motif 446 487 IPR010402 GO:0005515
Cma12g00207 646 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 Pfam GATA zinc finger 517 553 IPR000679 GO:0006355|GO:0043565
Cma12g00207 646 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 308 553 - -
Cma12g00207 646 MobiDBLite consensus disorder prediction 329 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00536 Cma-Chr5:2605144 Cma12g00207 Cma-Chr12:975513 4.63E-53 dispersed
Cma12g00207 Cma-Chr12:975513 Cma19g00483 Cma-Chr19:5772608 8.21E-56 dispersed
Cma12g00207 Cma-Chr12:975513 Cma05g00535 Cma-Chr5:2594145 2.28E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35960 PF06203 CCT 3.00E-13 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00207 - - cmax:111495925 598.201