Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00207 | ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTATTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGAATGCTGTGGACTTCCCCGGACGTAGTGGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTCCGTCAGGAGGTTGCTTTCAGGATGCAGCGCAACAAGGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTCTCGAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGGGCAGTTTGAAAGTGATGCTGCTGCTGCTGCTGCTGTCAAAGAAGACTTGGACTGCAGACAGGAAAAAAAGGCCATGATGATGCCTGTTTCTGGCTTTTTTTCATTCATTCCGGCCCTCGTTTTGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTTCAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCGTATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTGCAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATTAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAAGGCTCGAGTAATCCTTCTGTTGACCTTGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAATGATGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG | 1941 | 49.25 | MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLNAVDFPGRSGQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHRVTPAGQFESDAAAAAAVKEDLDCRQEKKAMMMPVSGFFSFIPALVLGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEARMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHINRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELANPSDTDIDIPTNFD | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 975513 | 989072 | + | CmaCh12G002070.1 | Cma12g00207 | 304697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00207 | 646 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Cma12g00207 | 646 | SMART | tify_2 | 378 | 413 | IPR010399 | - | |
Cma12g00207 | 646 | SMART | GATA_3 | 194 | 247 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | SMART | GATA_3 | 511 | 564 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | MobiDBLite | consensus disorder prediction | 165 | 194 | - | - | |
Cma12g00207 | 646 | MobiDBLite | consensus disorder prediction | 565 | 646 | - | - | |
Cma12g00207 | 646 | CDD | ZnF_GATA | 200 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | ProSitePatterns | GATA-type zinc finger domain. | 517 | 544 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 512 | 555 | - | - | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 66 | 249 | IPR045280 | GO:0006355 | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 552 | 646 | IPR045280 | GO:0006355 | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 308 | 553 | IPR045280 | GO:0006355 | |
Cma12g00207 | 646 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 193 | 244 | - | - | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 66 | 249 | - | - | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 552 | 646 | - | - | |
Cma12g00207 | 646 | Gene3D | - | 513 | 559 | IPR013088 | GO:0006355|GO:0008270 | |
Cma12g00207 | 646 | MobiDBLite | consensus disorder prediction | 603 | 622 | - | - | |
Cma12g00207 | 646 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Cma12g00207 | 646 | CDD | ZnF_GATA | 516 | 551 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | ProSiteProfiles | Tify domain profile. | 378 | 413 | IPR010399 | - | |
Cma12g00207 | 646 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 245 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | ProSiteProfiles | CCT domain profile. | 132 | 174 | IPR010402 | GO:0005515 | |
Cma12g00207 | 646 | ProSiteProfiles | CCT domain profile. | 446 | 488 | IPR010402 | GO:0005515 | |
Cma12g00207 | 646 | ProSitePatterns | GATA-type zinc finger domain. | 200 | 227 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | Gene3D | - | 191 | 250 | IPR013088 | GO:0006355|GO:0008270 | |
Cma12g00207 | 646 | Pfam | tify domain | 381 | 412 | IPR010399 | - | |
Cma12g00207 | 646 | Pfam | tify domain | 73 | 105 | IPR010399 | - | |
Cma12g00207 | 646 | Pfam | CCT motif | 132 | 174 | IPR010402 | GO:0005515 | |
Cma12g00207 | 646 | Pfam | CCT motif | 446 | 487 | IPR010402 | GO:0005515 | |
Cma12g00207 | 646 | Pfam | GATA zinc finger | 200 | 236 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | Pfam | GATA zinc finger | 517 | 553 | IPR000679 | GO:0006355|GO:0043565 | |
Cma12g00207 | 646 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 308 | 553 | - | - | |
Cma12g00207 | 646 | MobiDBLite | consensus disorder prediction | 329 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00536 | Cma-Chr5:2605144 | Cma12g00207 | Cma-Chr12:975513 | 4.63E-53 | dispersed | |
Cma12g00207 | Cma-Chr12:975513 | Cma19g00483 | Cma-Chr19:5772608 | 8.21E-56 | dispersed | |
Cma12g00207 | Cma-Chr12:975513 | Cma05g00535 | Cma-Chr5:2594145 | 2.28E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35960 | PF06203 | CCT | 3.00E-13 | CL0281 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00207 | - | - | cmax:111495925 | 598.201 |